RetrogeneDB ID: | retro_itri_1370 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393460.1:1974577..1974934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E2 | ||
Ensembl ID: | ENSSTOG00000003508 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293] |
Percent Identity: | 65.29 % |
Parental protein coverage: | 50.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWR-FYSHMVRPGDL-TGHSDFHLFKEGIKP |
P....YT.W.S.RTP...TSS.SYE.NIKQI.T..S.EQF.R.FY.HM..P.DL..GHS.F.LFKE.IK. | |
Retrocopy | PVVQLYTSWDSMRTPVSATSSPSYEKNIKQISTLDSLEQF*R>FYNHMICPKDL<DGHSNFYLFKEEIKL |
Parental | MWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV |
MWEDDA.KNG.KWII...KGLAS..WE.LILAMLG..FM.GEEIC...VSV | |
Retrocopy | MWEDDAYKNGDKWIIHQWKGLASHYWEKLILAMLGKWFMFGEEICRDMVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016456 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011328 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013786 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000015082 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011269 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005206 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009155 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013108 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002230 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003508 | 3 retrocopies |
retro_itri_1270, retro_itri_1370 , retro_itri_573,
|