RetrogeneDB ID: | retro_itri_1548 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393537.1:165960..166516(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSSTOG00000002230 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:3287] |
Percent Identity: | 74.73 % |
Parental protein coverage: | 84.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MATVEPETTPTPNPPPTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKT-WQANLRLISKFDTV |
M.TVE..TTPT.NP.P.E.EKT.S.QE.ANPE.Y.KHPLQNRWA..F..NDKS...WQANL.LIS.FDTV | |
Retrocopy | MVTVELGTTPTANPLPPEKEKTDSHQEIANPEPYVKHPLQNRWAFCFILNDKSSIIWQANLLLISRFDTV |
Parental | EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIG |
EDF..LY.H..LSSNLMPG.DYS.F.D..EP.WEDEKNK.GGRWL.TLNK.QR.SDLDRF.LETLLCL.G | |
Retrocopy | EDFGVLYSHS*LSSNLMPGYDYSSF*DDFEPVWEDEKNKWGGRWLMTLNKRQRQSDLDRFCLETLLCLFG |
Parental | ESFDDYSDDVCGAVVNVRAKGDKIAIWT-TECENREAVTHIGRVYK |
E.FDD.SDDVCGAV...RAKGDKIA.WT.TECEN.EAVT.IGRVYK | |
Retrocopy | ECFDDHSDDVCGAVFHGRAKGDKIATWT>TECEN*EAVTYIGRVYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |