RetrogeneDB ID: | retro_itri_1491 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393507.1:2152188..2152552(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000020783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PPKDDKKKKDAGKSAKKDKDP-VNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
PPKDD.KK.DA.KSA.K...P.VNKSG.K.KKK.WSKGKV.DKLNNLVL..K..........P...L..P | |
Retrocopy | PPKDDTKK-DARKSARKTRTP>VNKSGSKPKKKNWSKGKVQDKLNNLVL-TKLLMSNSVRKFPTISL*DP |
Parental | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
AVVSER.KIRG.LAR.A...LLSKGLIKLVSKHRAQVIYT.NTKG.DAPA.GEDA | |
Retrocopy | AVVSERQKIRGFLAREA-EMLLSKGLIKLVSKHRAQVIYTKNTKGRDAPAVGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Macaca mulatta | ENSMMUG00000016894 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020783 | 3 retrocopies |
retro_itri_1491 , retro_itri_196, retro_itri_87,
|
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |