RetrogeneDB ID: | retro_itri_1728 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393682.1:37530..37902(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000011144 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTH |
MADEEED..FEEENEEIGGGAEGGQGKRKR.F.KELRCMMYGFGDDQNPYT.S.D.LEDLVIEFITE.TH | |
Retrocopy | MADEEEDLSFEEENEEIGGGAEGGQGKRKRIFTKELRCMMYGFGDDQNPYT*SLDSLEDLVIEFITEITH |
Parental | KAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYGS |
KAMSIGRQG.VQVED.VFLIRKDPRK.ARVKDLLTMNEELKRARKAFDEANYGS | |
Retrocopy | KAMSIGRQGQVQVEDTVFLIRKDPRKLARVKDLLTMNEELKRARKAFDEANYGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004542 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019855 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003347 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002701 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000001081 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018227 | 16 retrocopies | |
Loxodonta africana | ENSLAFG00000011432 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000008725 | 5 retrocopies | |
Mus musculus | ENSMUSG00000048100 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013494 | 6 retrocopies | |
Procavia capensis | ENSPCAG00000005773 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008033 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006839 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011144 | 8 retrocopies |
retro_itri_1094, retro_itri_1650, retro_itri_1717, retro_itri_1728 , retro_itri_214, retro_itri_70, retro_itri_812, retro_itri_969,
|
Tursiops truncatus | ENSTTRG00000003167 | 1 retrocopy |