Parental gene:

ENSDNOG00000018227

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6948:3179..11612(-)


>ENSDNOG00000018227
ATGGCAGATGAAGAGGAAGACCCCACATTTGAGGAAGAAAATGAAGAAATTGGAGGAGGTGCAGAAGGTGGACAGGGTAA
AAGAAAGAGACTTTTTTCTAAAGAACTACGGTGTATGATGTATGGATTTGGGGATGACCAGAATCCTTATACTGAGTCAG
TGGATATTCTTGAAGACCTTGTCATAGAGTTCATCACTGAAATGACTCACAAGGCAATGTCAATTGGAAGACAAGGTCGA
GTACAAGTTGAAGATATCGTCTTCTTGATTCGAAAGGACCCAAGGTTTGCTAGGAAAGACTTACTTACTATGAATTTGAA
ACGAGCTAGAAAAGCA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 3 .11 RPM
SRP012922_cerebellum 7 .01 RPM
SRP012922_heart 1 .86 RPM
SRP012922_kidney 7 .67 RPM
SRP012922_liver 3 .41 RPM
SRP012922_lung 4 .58 RPM
SRP012922_quadricep_muscle 1 .90 RPM
SRP012922_spleen 2 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004542 ortholog_one2many 1 retrogene
retro_amel_1015,
Canis familiaris ENSCAFG00000019855 ortholog_one2many 1 retrogene
retro_cfam_1084,
Choloepus hoffmanni ENSCHOG00000003347 ortholog_one2many 2 retrogenes
retro_chof_1739, retro_chof_296,
Callithrix jacchus ENSCJAG00000002701 ortholog_one2many 3 retrogenes
retro_cjac_1241, retro_cjac_1268, retro_cjac_969,
Cavia porcellus ENSCPOG00000001081 ortholog_one2many 1 retrogene
retro_cpor_1042,
Loxodonta africana ENSLAFG00000011432 ortholog_one2many 2 retrogenes
retro_lafr_781, retro_lafr_799,
Microcebus murinus ENSMICG00000008725 ortholog_one2many 5 retrogenes
retro_mmur_1061, retro_mmur_128, retro_mmur_1376, retro_mmur_53, retro_mmur_576,
Mus musculus ENSMUSG00000048100 ortholog_one2many 2 retrogenes
retro_mmus_1272, retro_mmus_710,
Nomascus leucogenys ENSNLEG00000002350 ortholog_many2many 1 retrogene
retro_nleu_27,
Otolemur garnettii ENSOGAG00000013494 ortholog_many2many 6 retrogenes
retro_ogar_192, retro_ogar_2232, retro_ogar_23, retro_ogar_2399, retro_ogar_2659, retro_ogar_2931,
Procavia capensis ENSPCAG00000005773 ortholog_many2many 1 retrogene
retro_pcap_80,
Sorex araneus ENSSARG00000008033 ortholog_one2many 1 retrogene
retro_sara_531,
Sus scrofa ENSSSCG00000006839 ortholog_many2many 1 retrogene
retro_sscr_87,
Ictidomys tridecemlineatus ENSSTOG00000011144 ortholog_many2many 8 retrogenes
retro_itri_1094, retro_itri_1650, retro_itri_1717, retro_itri_1728, retro_itri_214, retro_itri_70, retro_itri_812, retro_itri_969,
Tursiops truncatus ENSTTRG00000003167 ortholog_one2many 1 retrogene
retro_ttru_730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_214 72.62 75.00
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2. retro_dnov_222 90.38 91.07
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3. retro_dnov_234 73.53 60.71
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4. retro_dnov_314 80.77 91.07
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5. retro_dnov_577 92.31 91.07
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6. retro_dnov_599 81.44 85.71
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7. retro_dnov_630 91.43 91.07
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8. retro_dnov_703 92.31 91.07
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9. retro_dnov_893 80.95 91.07
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10. retro_dnov_925 87.74 91.07
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11. retro_dnov_1126 89.66 100.00
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12. retro_dnov_1140 93.00 87.50
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13. retro_dnov_1237 88.70 98.21
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14. retro_dnov_1308 80.00 98.21
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15. retro_dnov_1539 77.57 91.07
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16. retro_dnov_1899 89.57 98.21
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Download FASTA sequences of all ENSDNOG00000018227 retrocopies