RetrogeneDB ID: | retro_itri_1771 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393746.1:335106..335833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPT7 | ||
Ensembl ID: | ENSSTOG00000021378 | ||
Aliases: | None | ||
Description: | septin 7 [Source:HGNC Symbol;Acc:1717] |
Percent Identity: | 74.7 % |
Parental protein coverage: | 59.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | VEQSKVLIKEGGVQLL-LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFE--DYLNAES-RVNRRQMPDNRV |
VE..K.LIK.GG.QLL..TIVDTPG.GDAVDNS.CWQPVI..IDSK....DYLNA....VN..QMPDNR. | |
Retrocopy | VERYKDLIKVGGAQLL<VTIVDTPGLGDAVDNSHCWQPVIGNIDSKLSL*DYLNAKC<LVNTHQMPDNRS |
Parental | QCCLYFVAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLT-PEECQQFKKQIMKEIQEHKIKIYEFPE |
....YF.APSGHG..PLD.EFMK.LHEKVN.IPL.AKADTL...EECQ.FKKQIMKEIQEHK...YEFPE | |
Retrocopy | TVWIYFFAPSGHG--PLDSEFMKCLHEKVNSIPLTAKADTLS<TEECQKFKKQIMKEIQEHKT--YEFPE |
Parental | TDDEEENK-LVKKIKDRLPLAVVGSNTIIEVNG-KRVRGRQ-YPWGVAEVENGEHCDFTILRNMLIRTHM |
T.D.EENK..VKKIK.R.PLAV.GSNTIIEVNG.KR..G...YP.GVAEVENGEH.D.TILRNMLIRT.M | |
Retrocopy | TEDKEENK<VVKKIKGR*PLAVGGSNTIIEVNG>KRSEGGS>YPRGVAEVENGEHFDLTILRNMLIRT*M |
Parental | QDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLA |
QDLK.VTNNVH.EN.RS.KLAA.TYNGVDNNKNKGQL.KS.LA | |
Retrocopy | QDLKNVTNNVHDENDRSIKLAAGTYNGVDNNKNKGQLRKSSLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012276 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015624 | 3 retrocopies | |
Homo sapiens | ENSG00000122545 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001175 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021167 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001673 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006015 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019080 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006545 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000003788 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013357 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021378 | 3 retrocopies |
retro_itri_1332, retro_itri_1736, retro_itri_1771 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000027666 | 1 retrocopy |