RetrogeneDB ID: | retro_rnor_1424 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:37729859..37730711(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sept7 | ||
Ensembl ID: | ENSRNOG00000006545 | ||
Aliases: | Sept7, Cdc10 | ||
Description: | septin-7 isoform a [Source:RefSeq peptide;Acc:NP_072138] |
Percent Identity: | 96.48 % |
Parental protein coverage: | 64.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY |
PDNRVQCCLYFIAPSGHGLK.LDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY | |
Retrocopy | PDNRVQCCLYFIAPSGHGLKSLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY |
Parental | EFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTH |
EFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTH | |
Retrocopy | EFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTH |
Parental | MQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEM |
MQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPL.QMEEERREHVAKMK.......QVFEM | |
Retrocopy | MQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLVQMEEERREHVAKMKXXXXXXXQVFEM |
Parental | KVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEEEKANWEAQQRILEQQNSSRTLEKNKKK |
KVKEKVQKLKDSEAELQRRHEQMK.NLEAQHKELEEKRRQFEEEKANWEAQQRILEQQNSSRTLEKNKKK | |
Retrocopy | KVKEKVQKLKDSEAELQRRHEQMKMNLEAQHKELEEKRRQFEEEKANWEAQQRILEQQNSSRTLEKNKKK |
Parental | GKIF |
GKIF | |
Retrocopy | GKIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 146 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .40 RPM |
SRP017611_liver | 0 .00 RPM | 17 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012276 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015624 | 3 retrocopies | |
Homo sapiens | ENSG00000122545 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001175 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021167 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001673 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006015 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019080 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006545 | 9 retrocopies |
retro_rnor_1424 , retro_rnor_1425, retro_rnor_1426, retro_rnor_1427, retro_rnor_1428, retro_rnor_1431, retro_rnor_1445, retro_rnor_1446, retro_rnor_821,
|
Rattus norvegicus | ENSRNOG00000017952 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003788 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021378 | 3 retrocopies |