RetrogeneDB ID: | retro_itri_1796 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393802.1:4723..5506(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA7 | ||
Ensembl ID: | ENSSTOG00000012433 | ||
Aliases: | None | ||
Description: | annexin A7 [Source:HGNC Symbol;Acc:545] |
Percent Identity: | 76.49 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | KAAFKTMYGKDLIKDLKSELSGNMEELILALFMPPTYYDAWSLRNAMQGAGTQERVLIEILCTRTNQEIR |
.AAFKTMYGKDLIKDLKSELS.N..ELI..LF.PPTYYDA.SL.NAMQGA.TQE.VLI.ILCTRTNQEI. | |
Retrocopy | RAAFKTMYGKDLIKDLKSELSRNV*ELIISLFLPPTYYDA*SLWNAMQGAETQEHVLIQILCTRTNQEIQ |
Parental | DIVRCYQTEFGRDLEKDIRSDTSGHFERLLVSMC-QGNRDENQSVNHQMAQED-AQRLYQAGEGRLGTDE |
..V.CYQ.EFGRD.EKDIRSDTS...ERLLVS...QGN.DENQS.N.QMAQED..Q.LY.AG.GRLGTD. | |
Retrocopy | ETVICYQSEFGRDFEKDIRSDTS---ERLLVSTV<QGNCDENQSANLQMAQED<CQCLYKAGQGRLGTDG |
Parental | SCFNMILATRSFPQLKATMEAYSRMSNRDLLSSVGREFSGYVESGLKTILQCAL-NRPAFFAERLYYSMK |
SCFNMIL.TRSFPQLKATME.YSR.S..DLLSSVG.EFSG.VES.LKTIL.C...N.PAFFAE.LYYSMK | |
Retrocopy | SCFNMILVTRSFPQLKATMESYSRISYQDLLSSVGLEFSG*VESSLKTILKCTR<NCPAFFAEWLYYSMK |
Parental | GAGTDDSTLVRIVVSRSEIDLVQIKAMFTQMYQKTLGTMIASDTSGDYRKLLLAIVGQ |
G.G...STLV.IV.S.SEI.LV.IK.MF.QMYQK.LGTMI.SDT..DY.KLLLAIVGQ | |
Retrocopy | GTGSYNSTLVKIVTSQSEIELVPIKQMFNQMYQKPLGTMIGSDTIRDY*KLLLAIVGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014749 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001720 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000013143 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013001 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007136 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012433 | 1 retrocopy |
retro_itri_1796 ,
|