RetrogeneDB ID:

retro_mmur_884

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_118999:1..891(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ANXA7
Ensembl ID:ENSMICG00000013143
Aliases:None
Description:annexin A7 [Source:HGNC Symbol;Acc:545]


Retrocopy-Parental alignment summary:






>retro_mmur_884
AGTCAGCCTGCTTCGATGACTCAGGGCGCCCAAGGAACAGTCAGACCAGCTGCCAACTTCGATGCTATGATAGATGCAGA
AATTCTCCATAAAGCAATGAAGGGTTTTGGGACAGACGAGCAAGCCATTGTGGATGTTGTGGCCAACCGTTCCAAAGATC
AGAGGCAAAAAATTAAAGCAGCTTTTAAGACCATGTATGGCGAGGATTTGATCAAAGATCTCAAATCAGAGTTAAGTGGA
AATATGGAAGAACTAATCCTTGCCCTGTTCACGCCTCCTGCATATTACGATGCCTGGAGTTTACGGAACGCAGTGCAGGA
GCAGGAACTCAGGAACGCGTATTGACTGAGATTTTGTGCACAAGAACAAATCAGGAAATCCGAGAAATCGTCAGAGGTTA
TCAATCAGAATTAGGATGAGACCTTGAAAAGGACAGTAGGTCAGATACATCAGGGCCTTTTGAATGTTTACTTGTATCCA
TGTGCCAGGGAAATCGTGATGACAACCAGAGTGTAAACCACCAAATGGCTCAGGAAGATGCTCAGCGTCTCTATCAAGCT
GGTGAGGGAAGACTAGGGACAGATGAATCTTGCTTTAACATGATCCTTGCCACGAGAAGCTTTCCTCAGCTGAAAGCTAC
CATGGAGGCTTATTCCAGGATGGCTAATTGAGATTTGTTAAGCAGTGTGGGCCGTGAGTTTTCTGGGTACGTTGAAAGTG
GTTTGAAGACCATCTTGCAGTGCGCCCTGAACCGCCCTGCCTTCTTTGCTGAGAGGCTCTACTATGCTATGAAAGGTGCT
GGCACAGATGACTCCACCCTGGTCAGGACTGTGGCCACTCGAAGTGAGATTGATCTTGTGCAGATAAAACAGATGTTTAC
GCAGATGTAT

ORF - retro_mmur_884 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.26 %
Parental protein coverage: 63.87 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSEPAAMSQGTQGTIRAAANFDAMRDAEILRKAMKGFGTDEQAIEDVVANRSNDQRQKIKAAFKTMYGKDL
S.PA.M.QG.QGT.R.AANFDAM.DAEIL.KAMKGFGTDEQAI.DVVANRS.DQRQKIKAAFKTMYG.DL
RetrocopySQPASMTQGAQGTVRPAANFDAMIDAEILHKAMKGFGTDEQAIVDVVANRSKDQRQKIKAAFKTMYGEDL
ParentalIKDLKSELSGNMEELILALFMPSPYYDAWSLRNAMQ-GAGTQEHVLIEILCTRTNQDIREIVRCYQSEFG
IKDLKSELSGNMEELILALF.P..YYDAWSLRNA.Q.GAGTQE.VL.EILCTRTNQ.IREIVR.YQSE.G
RetrocopyIKDLKSELSGNMEELILALFTPPAYYDAWSLRNAVQ<GAGTQERVLTEILCTRTNQEIREIVRGYQSELG
ParentalRDLEKDIRSDTSGHFERLLVSMCQGNRDENQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNRILATRSFP
.DLEKD.RSDTSG.FE.LLVSMCQGNRD.NQSVNHQMAQEDAQRLYQAGEGRLGTDESCFN.ILATRSFP
Retrocopy*DLEKDSRSDTSGPFECLLVSMCQGNRDDNQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFP
ParentalQLRATMEAYSRMANRDLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLYCSMKGAGTDDSTLVRTAV
QL.ATMEAYSRMAN.DLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLY..MKGAGTDDSTLVRT..
RetrocopyQLKATMEAYSRMAN*DLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLYYAMKGAGTDDSTLVRTVA
ParentalSRSEIDLVQKKQMFTQMY
.RSEIDLVQ.KQMFTQMY
RetrocopyTRSEIDLVQIKQMFTQMY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_884 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_884 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000147491 retrocopy
Callithrix jacchus ENSCJAG000000017203 retrocopies
Microcebus murinus ENSMICG00000013143 2 retrocopies
retro_mmur_404, retro_mmur_884 ,
Pteropus vampyrus ENSPVAG000000130011 retrocopy
Rattus norvegicus ENSRNOG000000071361 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000124331 retrocopy



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