RetrogeneDB ID: | retro_rnor_2446 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:30197063..30197776(+) | ||
Located in intron of: | ENSRNOG00000007197 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Anxa7 | ||
Ensembl ID: | ENSRNOG00000007136 | ||
Aliases: | None | ||
Description: | annexin A7 [Source:RefSeq peptide;Acc:NP_569100] |
Percent Identity: | 78.01 % |
Parental protein coverage: | 50.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GGYPSPGGYP-APGGY--PGT-LNPGGPPSYPGGQGFGAPPGGAGFSGYPQPPAQ-SYGGGPAQVPVPGG |
GGYP..GGYP..PGGY..PG..LNPGG.P.YPGGQGFGAPP.GAGFSG.PQPPA..S.GGGPAQVPV.GG | |
Retrocopy | GGYPGAGGYP>IPGGYPAPGV<LNPGGAPAYPGGQGFGAPPSGAGFSGNPQPPAH<SCGGGPAQVPVSGG |
Parental | FPGGQMPSQYPGGQSPYPGQPAAMTQGTQGTIRPASNFDAMRDAEILRKAMKGFGTDEQAIVDVVSNRSN |
FP.GQ...QYP.GQ.PY.G.PA.MTQG.QGTIRP.SNFDA.R.AEILRKAMKGFGTD.QAIVDVVSN..N | |
Retrocopy | FPRGQRLCQYPAGQAPYLGHPAVMTQGIQGTIRPVSNFDALRGAEILRKAMKGFGTDGQAIVDVVSNHPN |
Parental | DQRQQIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPPTYYDAWSLRKAIQGAGTQERVLIEILCTR |
DQR.QIKAAFK.MYGKDLIKDL..ELSGNMEELI.ALFMP.TYYDAWSL.KA.QGA.TQERVLIEILC.. | |
Retrocopy | DQRRQIKAAFKNMYGKDLIKDLELELSGNMEELIFALFMPSTYYDAWSLWKAVQGARTQERVLIEILCKG |
Parental | TNQEIRDIVRCYQLEFGRELERDIRSDTSGH |
T.QEI.DI.R..QLEFG..LE.D..SDTSGH | |
Retrocopy | TKQEIQDILRYHQLEFG*DLEKDTMSDTSGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .08 RPM |
SRP017611_liver | 0 .00 RPM | 7 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014749 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001720 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000013143 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013001 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007136 | 1 retrocopy |
retro_rnor_2446 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012433 | 1 retrocopy |