RetrogeneDB ID: | retro_itri_414 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393290.1:4401659..4402359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNL1 | ||
Ensembl ID: | ENSSTOG00000000075 | ||
Aliases: | None | ||
Description: | thioredoxin-like 1 [Source:HGNC Symbol;Acc:12436] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEK-IKQHLENDPGSNE |
MSNKYPQAVFLEVDVHQCQGTAATNNISATPT.LFFRNKVR.DQYQGADAVGLEEK.IKQHLE.D.GSNE | |
Retrocopy | MSNKYPQAVFLEVDVHQCQGTAATNNISATPTVLFFRNKVRMDQYQGADAVGLEEK>IKQHLESDLGSNE |
Parental | DTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGP |
DT.IPKGYMD.MPFINKAGCEC.N.S.EHGFDNCLRKDM.FLESDCDEQLLITVAFNQPVKLYSMKFQGP | |
Retrocopy | DTVIPKGYMD*MPFINKAGCECFNQSGEHGFDNCLRKDMAFLESDCDEQLLITVAFNQPVKLYSMKFQGP |
Parental | DNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEE |
DNGQGPKY.KIFINLP.SMDFEE.ERSEPTQALELTEDDIKEDGIVPL.YVKFQ.VNSVTIFVQSNQGEE | |
Retrocopy | DNGQGPKYAKIFINLP*SMDFEETERSEPTQALELTEDDIKEDGIVPLLYVKFQSVNSVTIFVQSNQGEE |
Parental | ETTRISYFTFIGTPVQATNMNDFK |
ETTRISYFTFIGTPVQATNMNDFK | |
Retrocopy | ETTRISYFTFIGTPVQATNMNDFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000137 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010262 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000075 | 2 retrocopies |
retro_itri_302, retro_itri_414 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000020668 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000017328 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001161 | 1 retrocopy |