Parental gene:

ENSSTOG00000020668

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393369.1:2811891..2822379(+)


>ENSSTOG00000020668
GCATTGTATCTTGTTTCATCTTCTCAAGAAGCTTTTCAGGAAGCCTTGAACTCTGCAGGAGACAAGCTTGTAGTAGTTGA
CTTCTCTGCCACGTGGTGCGGCCCTTGCAAAATGATCAAGCCTTTCTTTCATTCCCTCTCTGAAAAATATTCCAATGTGT
TGTTCCTTGAAGTAGACGTGGACGACTGTCAGGACGTTGCTGCAGATTGTGAAGTCAAATGCATGCCTACCTTCCAGTTT
TTTAAGAAGGGTCAAAAGGTGGGTGAGTTTTCTGGAGCTAATAAGGAAAAGCTCGAAGCCACCATCAATGAATTTGTCTA
A

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013018 ortholog_one2many 3 retrogenes
retro_acar_112, retro_acar_121, retro_acar_122,
Ailuropoda melanoleuca ENSAMEG00000018017 ortholog_one2one 3 retrogenes
retro_amel_1559, retro_amel_211, retro_amel_217,
Bos taurus ENSBTAG00000002953 ortholog_one2one 2 retrogenes
retro_btau_1267, retro_btau_418,
Choloepus hoffmanni ENSCHOG00000011506 ortholog_one2many 10 retrogenes
retro_chof_1111, retro_chof_127, retro_chof_1557, retro_chof_1680, retro_chof_1696, retro_chof_240, retro_chof_2424, retro_chof_317, retro_chof_617, retro_chof_82,
Callithrix jacchus ENSCJAG00000017321 possible_ortholog 5 retrogenes
retro_cjac_1407, retro_cjac_2536, retro_cjac_2733, retro_cjac_3010, retro_cjac_69,
Cavia porcellus ENSCPOG00000015348 possible_ortholog 5 retrogenes
retro_cpor_1048, retro_cpor_49, retro_cpor_54, retro_cpor_55, retro_cpor_74,
Dasypus novemcinctus ENSDNOG00000019205 ortholog_one2many 20 retrogenes
retro_dnov_100, retro_dnov_1047, retro_dnov_1122, retro_dnov_1222, retro_dnov_1353, retro_dnov_1403, retro_dnov_1404, retro_dnov_1628, retro_dnov_1634, retro_dnov_1646, retro_dnov_1949, retro_dnov_1996, retro_dnov_2069, retro_dnov_2197, retro_dnov_2239, retro_dnov_290, retro_dnov_466, retro_dnov_593, retro_dnov_843, retro_dnov_852,
Equus caballus ENSECAG00000013324 ortholog_one2one 1 retrogene
retro_ecab_51,
Echinops telfairi ENSETEG00000003065 ortholog_one2many 13 retrogenes
retro_etel_1173, retro_etel_1256, retro_etel_1672, retro_etel_1725, retro_etel_1807, retro_etel_1831, retro_etel_1932, retro_etel_1956, retro_etel_320, retro_etel_389, retro_etel_737, retro_etel_903, retro_etel_926,
Felis catus ENSFCAG00000004790 ortholog_one2one 4 retrogenes
retro_fcat_1096, retro_fcat_1105, retro_fcat_2025, retro_fcat_877,
Homo sapiens ENSG00000136810 possible_ortholog 7 retrogenes
retro_hsap_1713, retro_hsap_206, retro_hsap_2330, retro_hsap_3052, retro_hsap_3614, retro_hsap_405, retro_hsap_736,
Gorilla gorilla ENSGGOG00000006925 possible_ortholog 6 retrogenes
retro_ggor_1283, retro_ggor_1769, retro_ggor_2440, retro_ggor_35, retro_ggor_401, retro_ggor_620,
Loxodonta africana ENSLAFG00000012856 ortholog_one2many 2 retrogenes
retro_lafr_372, retro_lafr_93,
Macropus eugenii ENSMEUG00000003515 ortholog_one2many 8 retrogenes
retro_meug_1198, retro_meug_1204, retro_meug_1603, retro_meug_192, retro_meug_2170, retro_meug_2175, retro_meug_539, retro_meug_840,
Microcebus murinus ENSMICG00000002128 possible_ortholog 2 retrogenes
retro_mmur_118, retro_mmur_717,
Myotis lucifugus ENSMLUG00000009065 ortholog_one2one 3 retrogenes
retro_mluc_1268, retro_mluc_1940, retro_mluc_776,
Macaca mulatta ENSMMUG00000010322 possible_ortholog 1 retrogene
retro_mmul_167,
Mustela putorius furo ENSMPUG00000007426 ortholog_one2one 3 retrogenes
retro_mputfur_1230, retro_mputfur_693, retro_mputfur_840,
Mus musculus ENSMUSG00000028367 possible_ortholog 2 retrogenes
retro_mmus_3063, retro_mmus_432,
Otolemur garnettii ENSOGAG00000009165 possible_ortholog 6 retrogenes
retro_ogar_1573, retro_ogar_2763, retro_ogar_3141, retro_ogar_3205, retro_ogar_727, retro_ogar_851,
Ochotona princeps ENSOPRG00000013805 possible_ortholog 11 retrogenes
retro_opri_1132, retro_opri_1172, retro_opri_220, retro_opri_309, retro_opri_468, retro_opri_643, retro_opri_681, retro_opri_738, retro_opri_81, retro_opri_887, retro_opri_89,
Procavia capensis ENSPCAG00000014011 ortholog_one2many 1 retrogene
retro_pcap_311,
Pongo abelii ENSPPYG00000019491 possible_ortholog 2 retrogenes
retro_pabe_1428, retro_pabe_2965,
Pan troglodytes ENSPTRG00000021245 possible_ortholog 7 retrogenes
retro_ptro_1158, retro_ptro_1703, retro_ptro_1988, retro_ptro_2444, retro_ptro_309, retro_ptro_339, retro_ptro_524,
Pteropus vampyrus ENSPVAG00000007265 ortholog_one2one 1 retrogene
retro_pvam_433,
Rattus norvegicus ENSRNOG00000012081 possible_ortholog 1 retrogene
retro_rnor_616,
Sorex araneus ENSSARG00000007465 ortholog_one2one 2 retrogenes
retro_sara_373, retro_sara_525,
Sarcophilus harrisii ENSSHAG00000006739 ortholog_one2many 1 retrogene
retro_shar_329,
Sus scrofa ENSSSCG00000005453 ortholog_one2one 1 retrogene
retro_sscr_786,
Ictidomys tridecemlineatus ENSSTOG00000000075 within_species_paralog 2 retrogenes
retro_itri_302, retro_itri_414,
Tupaia belangeri ENSTBEG00000011193 possible_ortholog 2 retrogenes
retro_tbel_1293, retro_tbel_3405,
Tursiops truncatus ENSTTRG00000000119 ortholog_one2one 1 retrogene
retro_ttru_1378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_6 87.50 99.05
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2. retro_itri_714 54.17 66.67
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3. retro_itri_823 83.33 68.57
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4. retro_itri_884 65.88 80.00
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Download FASTA sequences of all ENSSTOG00000020668 retrocopies