RetrogeneDB ID: | retro_itri_596 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:4164706..4165014(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000022124 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.72 % |
Parental protein coverage: | 98.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KQLFHGTSVSIENFLSWEAKFDVELLKIKKKKQLKEEEQA-EKINVSRKQLFETDHNLDTSDIQFLEDAG |
KQLFH......E.FLSW..K...ELLKIKK....KEE....EKIN...........N..TSDIQFLEDAG | |
Retrocopy | KQLFHSSPATVESFLSWKDKSEAELLKIKKQWK-KEEQAG<EKINLVGNS-YLIHSNVNTSDIQFLEDAG |
Parental | NNVEVDESLFQEMDDLELEDDEDDPDYNPADPGSDS |
NN.EVDESLF...DDL.....ED...Y.PA.P.SDS | |
Retrocopy | NNGEVDESLFHKRDDLKQKNNEDNLNYTPAAPESDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005692 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009689 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007516 | 1 retrocopy | |
Equus caballus | ENSECAG00000006587 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000019085 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000008170 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017837 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013592 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005016 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020231 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022124 | 1 retrocopy |
retro_itri_596 ,
|
Tupaia belangeri | ENSTBEG00000002543 | 2 retrocopies |