RetrogeneDB ID: | retro_ocun_691 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:45480933..45481659(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025667 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RWDD1 | ||
Ensembl ID: | ENSOCUG00000013592 | ||
Aliases: | None | ||
Description: | RWD domain containing 1 [Source:HGNC Symbol;Acc:20993] |
Percent Identity: | 88.02 % |
Parental protein coverage: | 99.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTDYGEEQRNELEALESIYPDSFTVLSEKPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDETPLYEIF |
MTDY.EEQR.ELEALESIY.DSFTVLSEKPPSFTITVTSEAGE.DETVQTTLKFT.SEKYPD..PLYEIF | |
Retrocopy | MTDYREEQRKELEALESIYTDSFTVLSEKPPSFTITVTSEAGEKDETVQTTLKFTHSEKYPDDIPLYEIF |
Parental | SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKIIFLEIRKMNKTMSDSYQKQL |
SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIK....E..K..K.......KQ. | |
Retrocopy | SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKKKEAEEAEKQI |
Parental | FHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEV |
FHG.P.TIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNK.SGKQLFETDHNLDTSDIQFLEDAGN.VEV | |
Retrocopy | FHGAPITIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKSSGKQLFETDHNLDTSDIQFLEDAGNSVEV |
Parental | DESLFQEMDDLELEDDDDDPDYNPADPGSDST |
DESLFQEM.DLELEDDDDDPD.NPADPGSDST | |
Retrocopy | DESLFQEMGDLELEDDDDDPDLNPADPGSDST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 38 .19 RPM |
SRP017611_kidney | 0 .61 RPM | 40 .14 RPM |
SRP017611_liver | 0 .15 RPM | 13 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005692 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009689 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004474 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007516 | 1 retrocopy | |
Equus caballus | ENSECAG00000006587 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000019085 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000008170 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017837 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013592 | 1 retrocopy |
retro_ocun_691 ,
|
Procavia capensis | ENSPCAG00000005016 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020231 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022124 | 1 retrocopy |