RetrogeneDB ID: | retro_itri_678 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393310.1:662313..662629(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM50B | ||
Ensembl ID: | ENSSTOG00000023740 | ||
Aliases: | None | ||
Description: | transmembrane protein 50B [Source:HGNC Symbol;Acc:1280] |
Percent Identity: | 58.33 % |
Parental protein coverage: | 64.56 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | AFHTCGVF-STLAFFM----INAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIAS-MWILFGA |
A.H.CGVF.STLAF......I.A..N.QV..DS..S..L.RT.A.V.L..GF.LM.GSLIAS..WILFGA | |
Retrocopy | ASHPCGVF<STLAFLT*A*RISAALNVQVSSDSQGSSWLRRTSA*VCLLLGFTLMSGSLIAS<QWILFGA |
Parental | YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT |
.............V.FQNALIFFSTLI.KFGRTEEL.T | |
Retrocopy | CYSKY*SLSRTSCVVFQNALIFFSTLIFKFGRTEEL*T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003928 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012388 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003887 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013869 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022246 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023740 | 1 retrocopy |
retro_itri_678 ,
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