RetrogeneDB ID: | retro_lafr_416 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_15:10497492..10497837(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLT1B | ||
Ensembl ID: | ENSLAFG00000000965 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.57 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGF |
MISLTDTQK.GMGLTGFGVFFLFFGMIL.FDKALL.IGNV.FVAGLAFVIGLERTFRFFFQKHKMKATGF | |
Retrocopy | MISLTDTQKTGMGLTGFGVFFLFFGMILSFDKALLPIGNV*FVAGLAFVIGLERTFRFFFQKHKMKATGF |
Parental | FLGGVFVVLVGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVL |
FLG..FVVLVGW..IGMIF.IYGFF.LFRGFF.VVVGFIRRVP.L | |
Retrocopy | FLGDIFVVLVGWSFIGMIFKIYGFFFLFRGFFTVVVGFIRRVPSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013576 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000965 | 1 retrocopy |
retro_lafr_416 ,
|
Tarsius syrichta | ENSTSYG00000009234 | 1 retrocopy |