RetrogeneDB ID: | retro_dnov_1730 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_278768:9..330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLT1B | ||
Ensembl ID: | ENSDNOG00000013576 | ||
Aliases: | None | ||
Description: | golgi transport 1B [Source:HGNC Symbol;Acc:20175] |
Percent Identity: | 72.57 % |
Parental protein coverage: | 79.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | FFDKALLAIGNVLFVAGLAFV-IGLERTFRFFF-QKHKMKATGFFLGGVFVVLIGWP-LIGMIFEIYGFF |
FFDKALLA.....F.....FV.IG.ERTFRFF..QKHK.KA.GFFLG.VFVVL.GWP.LIGM..E..GFF | |
Retrocopy | FFDKALLA--TEMFIVTDCFV<IG*ERTFRFFA<QKHKVKAPGFFLGEVFVVLMGWP<LIGMVSEMCGFF |
Parental | LLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDKVGESNNMV |
LL.RGF..VVVG.IRRVPVLGSLLNLPGIRS.V.KV.ES.NMV | |
Retrocopy | LLLRGFCAVVVGIIRRVPVLGSLLNLPGIRSIVGKVEESSNMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 5 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 3 .85 RPM |
SRP012922_heart | 0 .00 RPM | 3 .71 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .82 RPM |
SRP012922_liver | 0 .00 RPM | 2 .48 RPM |
SRP012922_lung | 0 .00 RPM | 7 .33 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 2 .60 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016231 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012256 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013576 | 2 retrocopies |
retro_dnov_158, retro_dnov_1730 ,
|
Felis catus | ENSFCAG00000028655 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000965 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008797 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004756 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006352 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009234 | 1 retrocopy |