RetrogeneDB ID: | retro_tsyr_567 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_140797:1205..1615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000013681 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLT1B | ||
Ensembl ID: | ENSTSYG00000009234 | ||
Aliases: | None | ||
Description: | golgi transport 1B [Source:HGNC Symbol;Acc:20175] |
Percent Identity: | 78.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MISLTDTQKIGMGLTGFG-VFFLFFGMILFFDKALLAIGNVLFV-AGLAFVIGLERTFRFFFQKHKMKAT |
M.SLTDTQK.GMGLTG...VF.LFFGMILFFDKALLA.GNVLF...GLAFV.GLERTFR.FFQK.KMK.T | |
Retrocopy | MMSLTDTQKRGMGLTGLK<VFVLFFGMILFFDKALLATGNVLFG<TGLAFVVGLERTFRYFFQKCKMKVT |
Parental | GFFLGGVFVVLIGWPLIGMIFEIYGFF-LLFRGFFPVVVGFIRRVPILGSLLNLPGIRSFVDKVGESNNM |
G.FL..VF..LIGWPLIGMIF.IY.F...LFR...PVVVGFI.RV..LGSLLNLPGIRSFVDKV.ESNNM | |
Retrocopy | GIFLSDVFL-LIGWPLIGMIFKIYEFL>ILFRALLPVVVGFIKRVIVLGSLLNLPGIRSFVDKVEESNNM |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013576 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000965 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009234 | 1 retrocopy |
retro_tsyr_567 ,
|