RetrogeneDB ID: | retro_lafr_782 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_38:273037..273364(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OOEP | ||
Ensembl ID: | ENSLAFG00000012754 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.96 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | PTLRLRPWWFPVEELKEPLVFYLDSWLVDLIFGPDRAIIPKIEWMSQILLTVDVVDSSDLAKITIFGRP- |
P.....PWWFP..E...PLVF.L..WLVDLIFGPD.AII.K.E.MSQ.LL.V..VDS.DLAKI..F.... | |
Retrocopy | PQICILPWWFPMKEMWDPLVFHL*AWLVDLIFGPDQAIILKMEGMSQALLMVGIVDSEDLAKIAVFKQL* |
Parental | RVQNRVKKVLLAVASWHRKRRHRSEKMEQLEEFLKAGAS |
.V.N.VK.VLL...SW.........KM..LEEFLK..AS | |
Retrocopy | SVRNWVKIVLLGMVSWY*ECCA*D*KMK*LEEFLKSCAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009962 | 1 retrocopy | |
Homo sapiens | ENSG00000203907 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016832 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000012754 | 2 retrocopies |
retro_lafr_412, retro_lafr_782 ,
|
Myotis lucifugus | ENSMLUG00000017174 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000000416 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001204 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025904 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000029545 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000025957 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001487 | 2 retrocopies |