RetrogeneDB ID: | retro_mdom_28 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:49061713..49062367(+) | ||
Located in intron of: | ENSMODG00000000074 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000000077 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000002955 | ||
Aliases: | None | ||
Description: | GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:F6PJU2] |
Percent Identity: | 99.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAQCSGLVRRTLPAIALSLRTSSRRLCTATKQKNNGQNLEEDSSQNEQKIDSTATEKTLIEEKVKLEEQ |
MAAQCSGLVRRTLPAIALSLRTSSRRLCTATKQKNNGQNLEEDSSQNEQKIDST.TEKTLIEEKVKLEEQ | |
Retrocopy | MAAQCSGLVRRTLPAIALSLRTSSRRLCTATKQKNNGQNLEEDSSQNEQKIDSTSTEKTLIEEKVKLEEQ |
Parental | LKETLEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATESVPKDEIKEENPHLKNL |
LKETLEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATESVPKDEIKEENPHLKNL | |
Retrocopy | LKETLEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATESVPKDEIKEENPHLKNL |
Parental | YEGLVMTEVQIQKVFKKHGLLKLNPLGDKFDPYEHEALFHTPIEGKEPGTVALVNKVGYKLHGRTLRPAL |
YEGLVMTEVQIQKVFKKHGLLKLNPLGDKFDPYEHEALFHTPIEGKEPGTVALVNKVGYKLHGRTLRPAL | |
Retrocopy | YEGLVMTEVQIQKVFKKHGLLKLNPLGDKFDPYEHEALFHTPIEGKEPGTVALVNKVGYKLHGRTLRPAL |
Parental | VGVVKEP |
VGVVKEP | |
Retrocopy | VGVVKEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014364 | 1 retrocopy | |
Homo sapiens | ENSG00000109519 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000002590 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002955 | 1 retrocopy |
retro_mdom_28 ,
|
Mustela putorius furo | ENSMPUG00000010471 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011822 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032291 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011314 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015894 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007667 | 1 retrocopy |