RetrogeneDB ID: | retro_meug_1173 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold314029:1817..2219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF5 | ||
Ensembl ID: | ENSMEUG00000001521 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 5 [Source:HGNC Symbol;Acc:10787] |
Percent Identity: | 79.85 % |
Parental protein coverage: | 50.19 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS |
DLKDFMRQAGEV.FADAHRPKL..GV.EFASYSDLKNAI..LSGKEING.KIKLIEGSK.HS..RSRS.S | |
Retrocopy | DLKDFMRQAGEVSFADAHRPKLDKGVFEFASYSDLKNAIKNLSGKEINGSKIKLIEGSKGHSWWRSRSCS |
Parental | RTRSSSRSRSRSRSRS-RSYSRSRSRSHSKSRSVSRSPMPEKSQKRGSSSRSKSPASVDRQRSR |
.TRSSSRSRS.S.S.S..S..RSRS.S.SKS.SVSRSPMPEKSQK..SSSRSKSP.S.D.QRSR | |
Retrocopy | HTRSSSRSRS*SHSCSCKS*NRSRS*SNSKS*SVSRSPMPEKSQKQDSSSRSKSPPSMDLQRSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000001521 | 2 retrocopies |
retro_meug_1173 , retro_meug_2182,
|
Macropus eugenii | ENSMEUG00000016459 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011362 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021134 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005513 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001972 | 1 retrocopy |