RetrogeneDB ID: | retro_meug_1253 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold340998:474..1059(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSU72 | ||
Ensembl ID: | ENSMEUG00000015170 | ||
Aliases: | None | ||
Description: | SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016] |
Percent Identity: | 75.38 % |
Parental protein coverage: | 98.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IMPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLL |
IM.SS.LRVAVVC..N.NRSMEAH..L.KRG..VRSFG.G..V.LPGP....PNVY.FKTTY.QMY.DL. | |
Retrocopy | IMESSQLRVAVVCMCNMNRSMEAHRLLKKRGICVRSFGVGARVLLPGPTRHRPNVYNFKTTYEQMYYDLV |
Parental | RKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVINV |
.KD...YT.NGIL.MLDRN..IKP.PERFQ.CKDLFD.I.TCEERVYDQVVE.L..REQ.T.QPVHVINV | |
Retrocopy | KKDIKWYTYNGILSMLDRNQKIKPGPERFQSCKDLFDVIFTCEERVYDQVVEYLTFREQVTFQPVHVINV |
Parental | DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSSRTFLHTVCFY |
DI.DN.EEATLGAFLI.E.CQCIQ.TEDMEN.IDELL.EFEE.S.RTFLHTVCFY | |
Retrocopy | DIPDNEEEATLGAFLIWEICQCIQETEDMENDIDELLLEFEEQSNRTFLHTVCFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |