RetrogeneDB ID: | retro_cpor_83 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_46:3938687..3939272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000027061 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSU72 | ||
Ensembl ID: | ENSCPOG00000002238 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR |
MP..PLRVAVVC.SNQNRSMEAH.ILSKRGF.VRSFGTGTHVKLPGPAPDKPNVYDFKTTYD.MY.DL.R | |
Retrocopy | MPALPLRVAVVCFSNQNRSMEAHAILSKRGFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDEMYHDLVR |
Parental | KDKELYYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNV |
KDKEL.YTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEER.YDQVVEDLNSREQETCQPVHVVNV | |
Retrocopy | KDKEL-YTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERIYDQVVEDLNSREQETCQPVHVVNV |
Parental | DIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY |
DIQDN.EEATLGAFLICELCQCIQHTED..NE..ELLQEFEEK.GRAFLHTVCFY | |
Retrocopy | DIQDNQEEATLGAFLICELCQCIQHTEDIDNEMEELLQEFEEKTGRAFLHTVCFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .69 RPM | 36 .98 RPM |
SRP017611_kidney | 0 .63 RPM | 42 .92 RPM |
SRP017611_liver | 0 .70 RPM | 38 .30 RPM |
SRP040447_lung | 0 .03 RPM | 38 .34 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 47 .16 RPM |