RetrogeneDB ID: retro_meug_1271

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold34834:6155..6804(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_1271
AGTTACTTTCATCAATTCTTCACCAAAGAAGAATCCCAGGACCAGACTCTGGAGGATCAACAGCACTTCTTGCAGCATTT
CTTCAGGCTGGAAGAAACTGGATGGTTGGATGAGCCCACAAAGGCTCATATAAGGCAGCCTCGATGTGAGGTCCGAGATA
TTGCTGACTACTCATTTTTTCTTGGGAAGAGCAAAATGAGAAATAACCCCATAACCTACAGGATGGATCATCAACTACCC
AAGGGGCATGAATTGTAGGACAGTTGCAAAGGTCTTGTGGAAGACAGCAGAAGTTTGGAGGAGTGTGATACCCTTGAAAT
TCTGATGAGTGTATAAACAATATTCTGACACTGAGTTTGCTTTCCTGGCTGGAGATCATGGAGATGCCTACCCCTTTGAT
GGAGAAGGAAACATCTTAGCTCACGCTTTTGCCCCAGTTCCTGACTGCCAAGGAGCAATCCACTTTGACAGTGATGAAGA
ATGGTCATATTATGATGAGGGAATCTTCCTGGTTCATGAGATAGGCCATGCCCTGGGCCTGGGACACTCTCAGGATTCAG
ACTCTGTCATGTTCCCCAACTATCAACATCAAGACCCAAAATTCTTCAGGCTTGGGGATGATGATATAATAGGGAACCAG
ACCCTTTAT

Alignment

ORF - retro_meug_1271 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.68 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NYFHRFFFTKEESQYQTLEDQLRFLQHFQAGRN-WLDEPTKAIIRQPRCGVRDVADYSF-FPGKPKIRNN
          .YFH.FF...E.........Q......F......WLDEPTKA.IRQPRC.VRD.ADYSF.F.G..K....
Retrocopy SYFHQFFTKEESQDQTLEDQQHFLQHFFRLEETGWLDEPTKAHIRQPRCEVRDIADYSF>FLGRAK*EIT

Parental  P-ITYSIINYPRGMNHRTVEKILRKAAEVWSSVTPLKFRRVYKQHSDIEFAFLAGDHGDAYPFDGEGNTL
          P..T..IINYPRGMN.RTV.K.L.K.AEVW.SV.PLKF..VYKQ.SD.EFAFLAGDHGDAYPFDGEGN.L
Retrocopy P*PTGWIINYPRGMNCRTVAKVLWKTAEVWRSVIPLKF**VYKQYSDTEFAFLAGDHGDAYPFDGEGNIL

Parental  AHAFAPVPNYQGAIHFDRDEEWSYYDEGVNLFVVAVHEIGHALGLGHSQDSDSIMFPNYQYQDPKFFRLS
          AHAFAPVP..QGAIHFD.DEEWSYYDEG..L....VHEIGHALGLGHSQDSDS.MFPNYQ.QDPKFFRL.
Retrocopy AHAFAPVPDCQGAIHFDSDEEWSYYDEGIFL----VHEIGHALGLGHSQDSDSVMFPNYQHQDPKFFRLG

Parental  DDDIIGIQSLY
          DDDIIG.Q.LY
Retrocopy DDDIIGNQTLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1271 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1271 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141, retro_meug_1271 , retro_meug_1415, retro_meug_15, retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158, retro_meug_939, retro_meug_948, retro_meug_956, retro_meug_995,