RetrogeneDB ID: retro_meug_956

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold24370:25000..25418(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007772
• Aliases: None
• Description: None

Sequence

>retro_meug_956
TTTCATCAATTCTTTTTCACCAAAGAAGGATCCCCGCATCAAACTCTGGAGGAGCAGTTACACTTCTAGCATTTCTTCAG
GCTGGAAGAAATTGGATGGTTGGATGAGCCCACAAAGGCTATCATAAGGCAACCTCAGTGTGGGATCCAAGATATTGTTG
GCTACTCATGTTTCCTGGGAAGTCCAAGATTAGAAACAATCACATAACCTACAGTATCATCAATTATCCAAAGGTCAGGA
ATCATAAGACATTGAAAACATCCTGAAGAAGGCAGCAGAAGTCTGGAGCAGTGTGATGCCCTTGAAGTTCCAAAGAGTGT
ATAAGGAAGATTCTAACACTGTGTTTGCTTTCCTGGCTGGAGATCATGAAGATGCCTACCCCTTGGATGGAGAAGGAAGC
ATCCTAGGTCATGCTTTC

Alignment

ORF - retro_meug_956 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.31 %
• Parental protein coverage: 63.76 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FHRFFFTKEESQYQTLEDQLRFLQHFQAGR-NWLDEPTKAIIRQPRCGVRDVADYS-FFPGKPKIRNNPI
          FH.FFFTKE.S..QTLE.QL.F...F......WLDEPTKAIIRQP.CG..D...YS..FPGK.KIRNN.I
Retrocopy FHQFFFTKEGSPHQTLEEQLHF*HFFRLEEIGWLDEPTKAIIRQPQCGIQDIVGYS<MFPGKSKIRNNHI

Parental  TYSIINYPRGMNHRT-VEKILRKAAEVWSSVTPLKFRRVYKQHSDIEFAFLAGDHGDAYPFDGEGNTLAH
          TYSIINYP...NH.T..E.IL.KAAEVWSSV.PLKF.RVYK..S...FAFLAGDH.DAYP.DGEG..L.H
Retrocopy TYSIINYPKVRNHKT<IENILKKAAEVWSSVMPLKFQRVYKEDSNTVFAFLAGDHEDAYPLDGEGSILGH

Parental  AF
          AF
Retrocopy AF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_956 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_956 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007772	12 retrocopies	retro_meug_1141, retro_meug_1271, retro_meug_1415, retro_meug_15, retro_meug_1655, retro_meug_1863, retro_meug_2031, retro_meug_2158, retro_meug_939, retro_meug_948, retro_meug_956 , retro_meug_995,