>retro_meug_1371
GTGATGCAGAAGTATGAGAGAACAGATGAAGGTTCTTATGGACTAGTGTTCAAGGCCAAGAGCCAAGAGACCCACAAGAC
TGTGGCCCTGAAGCGGGTTTGTTTCAATGATGATGACGAGGGGGTACCAAGCTCTGCCGTGACAGAGATCTGCCTACTTA
AGGAGCTCACACATAAGAATATTGTCAGGCTTCATGATGTTTTGCACAGTGACAAGAAACTGACCCTGGTTTTTGAGCTC
TGTGATCAAGATCTGAAGAAATATTTTGACAGAAGCAATGGAGACCTACACCCTGAAATTGTGAAGTCATTGCTTTCCCA
ACTGTTAAAAGGCATTGGATTCTGCCACAGCTTTAATGTTCTGCATTAGACCTGAAGCCCCAGAACCTTCTAATTAACCA
GAATGGGGAGCTCAAGCTTGCTGATTTTGGGTTGGTTAGAGCCTTCAAAATCCCTGTTCGATGTTACTCTGCAGAGGTGG
TCACTTTGTGGTACTGCCCACCTGATGTCCTGTTCAGGGTCAAACTCTACTGCACATCTATTGACATGTGGTCAGCTGGT
TGCATCTTAGCAGAGCTGGCCAATGCTGGATGACTCCTCTTCCCTAGTAATGATGTAAATAATCAACTGAAGAGGATTTT
TAGGCTGCTGGGGACTCCAGCTGAGGAACAGTGGCCTGCCATAACCAAGCTTCCAGATTATAAGCCTTATCCTCTGTATC
CAGCAACAATGTCACTTGTCAATATTATATCCAAGCTCAATGCCACAGGGGGGCACCTATTG
ORF - retro_meug_1371 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.23 % |
Parental protein coverage: |
98.86 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VFQKVEKIGEGTYGVVYKARNRQTGQLVALKKIRLDSETEGVPSTAIREISLLKELKHPNIVRLLDVVHS |
| V.QK.E...EG.YG.V.KA....T...VALK........EGVPS.A..EI.LLKEL.H.NIVRL.DV.HS |
Retrocopy | VMQKYERTDEGSYGLVFKAKSQETHKTVALKRVCFNDDDEGVPSSAVTEICLLKELTHKNIVRLHDVLHS |
|
Parental | EKKLYLVFEFLSQDLKKYMDSAAATELPLHLVKSYLFQLLQGVNFCHSHRVIH-RDLKPQNLLINELGAI |
| .KKL.LVFE...QDLKKY.D......L....VKS.L.QLL.G..FCHS..V.H..DLKPQNLLIN..G.. |
Retrocopy | DKKLTLVFELCDQDLKKYFDRSNG-DLHPEIVKSLLSQLLKGIGFCHSFNVLH<LDLKPQNLLINQNGEL |
|
Parental | KLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFYSTAVDVWSIGCIFAEMVTRR-ALFPGDSEID |
| KLADFGL.RAF..P.R.Y..EVVTLWY..P..L...K.Y.T..D.WS.GCI.AE.......LFP...... |
Retrocopy | KLADFGLVRAFKIPVRCYSAEVVTLWYCPPDVLFRVKLYCTSIDMWSAGCILAELANAG*LLFPSNDVNN |
|
Parental | QLFRIFRTLGTPSEAMWPGVTQLPDYKGSFPKWTKKSIEEIVPSLDPEGKDLL |
| QL.RIFR.LGTP.E..WP..T.LPDYK.........S...I...L...G..LL |
Retrocopy | QLKRIFRLLGTPAEEQWPAITKLPDYKPYPLYPATMSLVNIISKLNATGGHLL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1371 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1371 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.