>retro_meug_2186
GTGATGCAGAAGTATGAGAGAACAGATGAAGGTTCTTATGGACTAGTGTTCAAGGCCAAGAGCCAAGAGACCCACAAGAC
TGTGGCCCTGAATCGGGTTTGTTTCAATGATGATGATGAGGGGGTACCAAGCTCTGCCCTGACAGAGATCTGCCTGCTTA
AGGAGCTCACACATAAGAATATTGTCAGGCTTCATGATGTTTTGCACAGTGACAAGAAACTGACCCTGGTTTTTGAGCTC
TGTGATCAAGATCTGAAGAAATATTTTGACAGAAGCAATGGAGACCTGCACCCTGAAATTGTGAAGTCATTGCTTTCCCA
ACTGCTAAAAGGCATTGGATTCTGCCACAGCTTTAATGTTCTGCATCAGGACCTGAAGCCCCAGAACCTTCTAATTAACC
AGAATGGGGAGCTCAAGCTTGCTGATTTTGGGTTGGTTAGAGCCTTCAAAATCCCTGTTCGATGTTACTCTGCAGAGGTG
GTCACTTTGTGGTACTGCCCACCTGATGTCCTGTTCAGGGTCAAACTCTACTGCGCATCTATTGACATGTGGTCAGCTGG
TTGCATCTTAGCAGAGCTGGCCAATGCTGGATGACTCCTCTTCCCTGGTAATGATGTAAATAATCAACTGAAGAGGATTT
TTATTGCTGCTGGGGACTCCAACTGAGGAACAGTGGCCTGCCATAACCAAGCTTCCAGATTATAAGCTTTATCCTCTGTA
TCCAGCAACAATGTCACTTGTCAATATTGTATCCAAGCTCAATGCCACAGGGGGGCACCTATTG
ORF - retro_meug_2186 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.03 % |
Parental protein coverage: |
98.86 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VFQKVEKIGEGTYGVVYKARNRQTGQLVALKKIRLDSETEGVPSTAIREISLLKELKHPNIVRLLDVVHS |
| V.QK.E...EG.YG.V.KA....T...VAL.........EGVPS.A..EI.LLKEL.H.NIVRL.DV.HS |
Retrocopy | VMQKYERTDEGSYGLVFKAKSQETHKTVALNRVCFNDDDEGVPSSALTEICLLKELTHKNIVRLHDVLHS |
|
Parental | EKKLYLVFEFLSQDLKKYMDSAAATELPLHLVKSYLFQLLQGVNFCHSHRVIHRDLKPQNLLINELGAIK |
| .KKL.LVFE...QDLKKY.D......L....VKS.L.QLL.G..FCHS..V.H.DLKPQNLLIN..G..K |
Retrocopy | DKKLTLVFELCDQDLKKYFDRSNG-DLHPEIVKSLLSQLLKGIGFCHSFNVLHQDLKPQNLLINQNGELK |
|
Parental | LADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFYSTAVDVWSIGCIFAEMVTRR-ALFPGDSEIDQ |
| LADFGL.RAF..P.R.Y..EVVTLWY..P..L...K.Y....D.WS.GCI.AE.......LFPG.....Q |
Retrocopy | LADFGLVRAFKIPVRCYSAEVVTLWYCPPDVLFRVKLYCASIDMWSAGCILAELANAG*LLFPGNDVNNQ |
|
Parental | LFRIF-RTLGTPSEAMWPGVTQLPDYKGSFPKW-TKKSIEEIVPSLDPEGKDLL |
| L.RIF...LGTP.E..WP..T.LPDYK...P......S...IV..L...G..LL |
Retrocopy | LKRIF>LLLGTPTEEQWPAITKLPDYK-LYPLYPATMSLVNIVSKLNATGGHLL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2186 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2186 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.