>retro_meug_789
ATGCAGAAGTATGAGAAGCTGGAGAAGATAGGCGAAGGCACCTATGGAACAGTGTTCAAGGCCAAGAACCGAGAGACCCA
CGAGATTGTGGCCCTGAAATGGGTTCACTTGGACGATGACGAGGGGGTACCAAGCTCTGCCCTGAGAGAGATCTGCCTGC
TTAAGGAGTTGAAGCATAAGAATATTGTCAGGCTTCATGATGTTTTGCACAGTGACAAGAAACTGACCCTGGTTTTTGAG
TTCTGTGACCAAGATCTGAAGAAATATTTTGACAGTTGCAATGGAGACCTGGACCCTGAAATTGTGAAGTCATTCCTTTT
CCAACTGCTAAAAGGCCTTGGATTCTGCCATAGCCGTAATGTTCTGCACTGGGACCTGAAGCCACAGAACCTTCTAATTA
ACCAGAATGGGGAACTCAAGCTTGCTGATTTTGGCTTGGCTAGAGCTTTCAGGATCCCTGTTCGATGTTACTCTGCAGAG
GTAGTCACTTTGTGGTACCGCCCACCAGATGTCCTGTTTGGGGCCAAACTCTACTCCACATCCATTGACATGTGGTCAGC
TGGTTGCATCTTTGCAGAGCTGGCCAATGCTGGACAGTCCCTCTTTCCTGGCAATGATGTAGATGATCAACTGAAGAGGA
TTTTTAGGCTGCTGGGGATGCCAACTGAGGAACAGTGGCCTGCCATGACCAAACTTCCAGATTATAAGCCTTATCCTATG
TATCCAGCAACAACATCACTTGTCAATGTTGTACCCAAGCTCAATGCCACAGGGAGGGACCTATTG
ORF - retro_meug_789 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.61 % |
Parental protein coverage: |
99.62 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MDVFQKVEKIGEGTYGVVYKARNRQTGQLVALKKIRLDSETEGVPSTAIREISLLKELKHPNIVRLLDVV |
| M....K.EKIGEGTYG.V.KA.NR.T...VALK...LD...EGVPS.A.REI.LLKELKH.NIVRL.DV. |
Retrocopy | MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKWVHLDDD-EGVPSSALREICLLKELKHKNIVRLHDVL |
|
Parental | HSEKKLYLVFEFLSQDLKKYMDSAAATELPLHLVKSYLFQLLQGVNFCHSHRVIHRDLKPQNLLINELGA |
| HS.KKL.LVFEF..QDLKKY.DS.....L....VKS.LFQLL.G..FCHS..V.H.DLKPQNLLIN..G. |
Retrocopy | HSDKKLTLVFEFCDQDLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHSRNVLHWDLKPQNLLINQNGE |
|
Parental | IKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFYSTAVDVWSIGCIFAEMVTR-RALFPGDSEI |
| .KLADFGLARAF..P.R.Y..EVVTLWYR.P..L.G.K.YST..D.WS.GCIFAE.......LFPG.... |
Retrocopy | LKLADFGLARAFRIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGQSLFPGNDVD |
|
Parental | DQLFRIFRTLGTPSEAMWPGVTQLPDYKGSFPKWTKKSIEEIVPSLDPEGKDLL |
| DQL.RIFR.LG.P.E..WP..T.LPDYK.........S....VP.L...G.DLL |
Retrocopy | DQLKRIFRLLGMPTEEQWPAMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_789 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_789 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.