RetrogeneDB ID:

retro_meug_789

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold18883:8747..9533(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDK3
Ensembl ID:ENSMEUG00000000815
Aliases:None
Description:cyclin-dependent kinase 3 [Source:HGNC Symbol;Acc:1772]


Retrocopy-Parental alignment summary:






>retro_meug_789
ATGCAGAAGTATGAGAAGCTGGAGAAGATAGGCGAAGGCACCTATGGAACAGTGTTCAAGGCCAAGAACCGAGAGACCCA
CGAGATTGTGGCCCTGAAATGGGTTCACTTGGACGATGACGAGGGGGTACCAAGCTCTGCCCTGAGAGAGATCTGCCTGC
TTAAGGAGTTGAAGCATAAGAATATTGTCAGGCTTCATGATGTTTTGCACAGTGACAAGAAACTGACCCTGGTTTTTGAG
TTCTGTGACCAAGATCTGAAGAAATATTTTGACAGTTGCAATGGAGACCTGGACCCTGAAATTGTGAAGTCATTCCTTTT
CCAACTGCTAAAAGGCCTTGGATTCTGCCATAGCCGTAATGTTCTGCACTGGGACCTGAAGCCACAGAACCTTCTAATTA
ACCAGAATGGGGAACTCAAGCTTGCTGATTTTGGCTTGGCTAGAGCTTTCAGGATCCCTGTTCGATGTTACTCTGCAGAG
GTAGTCACTTTGTGGTACCGCCCACCAGATGTCCTGTTTGGGGCCAAACTCTACTCCACATCCATTGACATGTGGTCAGC
TGGTTGCATCTTTGCAGAGCTGGCCAATGCTGGACAGTCCCTCTTTCCTGGCAATGATGTAGATGATCAACTGAAGAGGA
TTTTTAGGCTGCTGGGGATGCCAACTGAGGAACAGTGGCCTGCCATGACCAAACTTCCAGATTATAAGCCTTATCCTATG
TATCCAGCAACAACATCACTTGTCAATGTTGTACCCAAGCTCAATGCCACAGGGAGGGACCTATTG

ORF - retro_meug_789 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.61 %
Parental protein coverage: 99.62 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDVFQKVEKIGEGTYGVVYKARNRQTGQLVALKKIRLDSETEGVPSTAIREISLLKELKHPNIVRLLDVV
M....K.EKIGEGTYG.V.KA.NR.T...VALK...LD...EGVPS.A.REI.LLKELKH.NIVRL.DV.
RetrocopyMQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKWVHLDDD-EGVPSSALREICLLKELKHKNIVRLHDVL
ParentalHSEKKLYLVFEFLSQDLKKYMDSAAATELPLHLVKSYLFQLLQGVNFCHSHRVIHRDLKPQNLLINELGA
HS.KKL.LVFEF..QDLKKY.DS.....L....VKS.LFQLL.G..FCHS..V.H.DLKPQNLLIN..G.
RetrocopyHSDKKLTLVFEFCDQDLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHSRNVLHWDLKPQNLLINQNGE
ParentalIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGCKFYSTAVDVWSIGCIFAEMVTR-RALFPGDSEI
.KLADFGLARAF..P.R.Y..EVVTLWYR.P..L.G.K.YST..D.WS.GCIFAE.......LFPG....
RetrocopyLKLADFGLARAFRIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGQSLFPGNDVD
ParentalDQLFRIFRTLGTPSEAMWPGVTQLPDYKGSFPKWTKKSIEEIVPSLDPEGKDLL
DQL.RIFR.LG.P.E..WP..T.LPDYK.........S....VP.L...G.DLL
RetrocopyDQLKRIFRLLGMPTEEQWPAMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_789 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_789 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Macropus eugenii ENSMEUG00000000815 4 retrocopies
Macropus eugenii ENSMEUG000000146091 retrocopy
Monodelphis domestica ENSMODG000000078351 retrocopy



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