RetrogeneDB ID: | retro_meug_1850 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold6553:29676..30204(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000010122 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AQP9 | ||
| Ensembl ID: | ENSMEUG00000013669 | ||
| Aliases: | None | ||
| Description: | aquaporin 9 [Source:HGNC Symbol;Acc:643] |
Retrocopy-Parental alignment summary:
>retro_meug_1850
CTTGGTTGTGGTTCTGTAGCCCAAACCGTCTTCAGCCAAGGGACTGCAGGTGGACCTGTGACCACGAATGTTGGCTTTGC
ACTGGCTATTGTAATGGCTTTTTATGTGTCAGGAGGTGTCTTTGGTGGTCACGTTAACCCAGCAGTGTCCTTTGCTATGT
GTCTCTATGGATGGATGAAATGGTTCAAATTCCCTTTCTATGTGGTAACCCAGTTCCTGGGAGCCTTTGTAGGGGCTGCA
ACCCTCTTTGGAGTTTACTACGATGCACTTAAGACTTTTGCTGGGGGAAAATTGATCATCACAGGAGAAAATGCAACAGC
ACAGATTTTTGCAACATATCCGATTAAATACTTGACTATAGGAAATGAATTTGCAGACCAGGTGATGTCTACCACTTTCC
TTCTCTTGGGTGTGTTTGCCATTTTTGATGAAAAAAACTGGAGGGTCCCCAAAGGCCTAGAACCAGTTGGCCTACTGATC
CTTGTCATTGCTTGCTCACTGGGAATGAACAATGGTTGTGCCATGAAC
ORF - retro_meug_1850 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.52 % |
| Parental protein coverage: | 61.38 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LGCGSVAQTVLSRGTAGGPVTTNVGFAMAIVISLYVSGGVSGGHVNPAVSFAMCLYGRMKWFKFPFYVVA |
| LGCGSVAQTV.S.GTAGGPVTTNVGFA.AIV...YVSGGV.GGHVNPAVSFAMCLYG.MKWFKFPFYVV. | |
| Retrocopy | LGCGSVAQTVFSQGTAGGPVTTNVGFALAIVMAFYVSGGVFGGHVNPAVSFAMCLYGWMKWFKFPFYVVT |
| Parental | QFLGAFVGAAVLFGVYYDAITTFAEGKLIVTGENATAQIFATYPLNYLTIGNEFADQVMCSTFLLFGVFA |
| QFLGAFVGAA.LFGVYYDA..TFA.GKLI.TGENATAQIFATYP..YLTIGNEFADQVM..TFLL.GVFA | |
| Retrocopy | QFLGAFVGAATLFGVYYDALKTFAGGKLIITGENATAQIFATYPIKYLTIGNEFADQVMSTTFLLLGVFA |
| Parental | IFDEKNWRVPKGLEPVVVGLLILAIACSLGMNTGSAMN |
| IFDEKNWRVPKGLEPV..GLLIL.IACSLGMN.G.AMN | |
| Retrocopy | IFDEKNWRVPKGLEPV--GLLILVIACSLGMNNGCAMN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1850 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1850 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000013669 | 3 retrocopies |
retro_meug_1850 , retro_meug_533, retro_meug_674,
|
| Myotis lucifugus | ENSMLUG00000001108 | 2 retrocopies |