RetrogeneDB ID: retro_mluc_580

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:15582034..15582629(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024335
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AQP9
• Ensembl ID: ENSMLUG00000001108
• Aliases: None
• Description: None

Sequence

>retro_mluc_580
ATGCAATGGTTCAAATTTCCTTTTTATGTGGAAGCCCCACTCCTGGGAGCCTTCGTAGGGTCCACAATCCTCTTTGGTAT
TTACTATGATGGACTTATGTCCTTTGCTGTTGGAAAACTGCTCATCGTGGGAGAAAATGCAACAGCACACATTTTTGCAA
CGTACCCAGCTCCGTATGTGTCTCTGGCAAATGCATCTGCAGACCAAGTAATGCCCACCATGTTCCTCCTCATGATTGTC
TTCACCATCTTTGACTCCAAAAACAGGGGAGTCCCCAAAGGCCTAGAGCCCATTGCCATCGGCCTCCTGGTTATTGTCCT
TTCTTCCTCTTTGGGATTGAACTGTGGCTGTCCTGTGAATCCATCGCGAGACCTGAGTTCCAGACTTTTCACTGCTTTGG
CAGAATGGGGGTTTGATGTCTTCAGAGTTGGAAATAACTTCTGGTGGATCCCTGTTGTAGCCCTATGTTGGTGCTGCCAT
TGGAGGCCTCATTGATGTTCTTCTCGTTGAAATCCACCACCCAGACCCAAATCCAAACTTCGAGGCAGAACCACCGGAGG
ACAAACTACAGAAACATGAACTTAGTGTGGTAATG

Alignment

ORF - retro_mluc_580 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.58 %
• Parental protein coverage: 67. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MKWFKFPFYVGAQFLGAFVGSAILFGIYYDGIMSFADGKLLIVGENATAIIFATYPAPYLSLTNAFADQV
          M.WFKFPFYV.A..LGAFVGS.ILFGIYYDG.MSFA.GKLLIVGENATA.IFATYPAPY.SL.NA.ADQV
Retrocopy MQWFKFPFYVEAPLLGAFVGSTILFGIYYDGLMSFAVGKLLIVGENATAHIFATYPAPYVSLANASADQV

Parental  MSTMFLLLVVFAIFDSRNWGVPKGLQPIAIGLLIIVLSSSLGLNCGCAMNPARDLSPRLFTALAGWGFDV
          M.TMFLL..VF.IFDS.N.GVPKGL.PIAIGLL.IVLSSSLGLNCGC..NP.RDLS.RLFTALA.WGFDV
Retrocopy MPTMFLLMIVFTIFDSKNRGVPKGLEPIAIGLLVIVLSSSLGLNCGCPVNPSRDLSSRLFTALAEWGFDV

Parental  FRVGNNFWWIPVVA-PM-VGAAIGGLIYILLIEIHHPNPNPDFEAEPSEDKLEKHELSVVM
          FRVGNNFWWIPVVA.PM.VGAAIGGLI..LL.EIHHP.PNP.FEAEP.EDKL.KHELSVVM
Retrocopy FRVGNNFWWIPVVA<PM<VGAAIGGLIDVLLVEIHHPDPNPNFEAEPPEDKLQKHELSVVM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_580 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013669	3 retrocopies	retro_meug_1850, retro_meug_533, retro_meug_674,
Myotis lucifugus	ENSMLUG00000001108	2 retrocopies	retro_mluc_381, retro_mluc_580 ,