RetrogeneDB ID: retro_meug_533

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold132380:1500..1941(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000005165
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AQP9
• Ensembl ID: ENSMEUG00000013669
• Aliases: None
• Description: aquaporin 9 [Source:HGNC Symbol;Acc:643]

Sequence

>retro_meug_533
GCACAGATTTTTGCAACATATCCGTTTAAATACCTGACTGTAGCAAATGAATTTGCAGACCAGGTGATGTCTACCACATT
CCTTCTCTTGGTTGTGTTTGCCATTTTAGATGAAAAAAACTGGAGGGTCCCCAAGGGCCTAGAACCAGTTGTCATTGACC
TACTGATCCTTGTCCTTTCTTCATTGGGATTGAACAGTGATTGTGCCATGAACCTAGCTAGAGACCTGGGTCCCAGACTA
TTCACAGCTCTCGCAGGTTGGGGATTTGAAGTCTTCACAGCTGGAAGTTACTTCTGGTGGATCCCAGTGGTGGGTCCTTT
CCTGAGTGCCACCTTAGGAGGCTTCATCTGTATTTATGTCATTGAAATTCACCATACAGATCCAGTCTCAGAAGAAAAGA
TCGAACAAGTGGAGGAGAAAAATGAACTCAGTGTGATAATG

Alignment

ORF - retro_meug_533 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.68 %
• Parental protein coverage: 51.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AQIFATYPLNYLTIGNEFADQVMCSTFLLFGVFAIFDEKNWRVPKGLEPVVVGLLILAIACSLGMNTGSA
          AQIFATYP..YLT..NEFADQVM..TFLL..VFAI.DEKNWRVPKGLEPVV..LLIL....SLG.N...A
Retrocopy AQIFATYPFKYLTVANEFADQVMSTTFLLLVVFAILDEKNWRVPKGLEPVVIDLLILVLS-SLGLNSDCA

Parental  MNPARDLGPRVFTALAGWGVEVFTTASHFWWIPTVAPFLGAALGGFIYVFGIEIHHTVPVPEEKNEQVEE
          MN.ARDLGPR.FTALAGWG.EVFT..S.FWWIP.V.PFL.A.LGGFI....IEIHHT.PV.EEK.EQVEE
Retrocopy MNLARDLGPRLFTALAGWGFEVFTAGSYFWWIPVVGPFLSATLGGFICIYVIEIHHTDPVSEEKIEQVEE

Parental  KNELSVIM
          KNELSVIM
Retrocopy KNELSVIM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_533 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_533 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013669	3 retrocopies	retro_meug_1850, retro_meug_533 , retro_meug_674,
Myotis lucifugus	ENSMLUG00000001108	2 retrocopies	retro_mluc_381, retro_mluc_580,