RetrogeneDB ID: retro_meug_1962

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold74638:416..1028(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000002911
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CCNG2
• Ensembl ID: ENSMEUG00000008707
• Aliases: None
• Description: cyclin G2 [Source:HGNC Symbol;Acc:1593]

Sequence

>retro_meug_1962
ACACAGAGACTTTCTCTAGCTGTGAATTTACCGGACGGATTTCTATCCAAAATGAAGGTACAGCCCAAACATCTTGGATG
TGTGGGATTAAGTTGCTTCTATCTGGCTGTGAAATCGACAGAGGAGGGGAGAAATGTCCCATTAGCCACTGATTTGATAC
GAATAAGCCAATACAAATTCATCATTTCTGACCTGATGAGAACGGAAAAGATTGTGTTAGAGAAGGTGTGTTGGAAAGTC
AAAGCTACTACTGCCTTTCAGTTTCTACAGCTCTATGATTCACTCATTCATGAAAACTTTTCATTTGAAAGGAGAAAGAA
CCTGAGTTTTGAAAGACTGAAAGCTCAGCTTAAGTCATGCCAGTGTAGGATTATGTTTTCTAAAGAAAATCCTTCTGTAT
TGGCATTGTCTACAACTGCACTGCAGATTCAAGCACAGAAATTTATAGAATTGATGGAAGGAGTAGAATGTCTTCAGAAA
CATTCCAAGATAAATTGCAGAGATCTGACCTTCTGGCAGGAACTTGTAGTAAAGCGCCTAACTGAATACTCATCAAACAA
GTGTTCTAAACCAAATGTTCAGAAGTTGAAGTGGATTGTGTCTGGGCGTAGT

Alignment

ORF - retro_meug_1962 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.49 %
• Parental protein coverage: 59.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIIEEECNIPSTHDVIRISQCKCTASDIKRMEK
          T....LAVN..D.FL..MKV.PKHL.C.G..CF.LA....EE..N.P...D.IRISQ.K...SD..R.EK
Retrocopy TQRLSLAVNLPDGFLSKMKVQPKHLGCVGLSCFYLAVKSTEEGRNVPLATDLIRISQYKFIISDLMRTEK

Parental  IISEKLHYELEATTALNFLHLYHTIVLRHTS-ERKEVLSLDKLEAQLKACNCRLTFSKAKPSVLALCLLN
          I..EK......ATTA..FL.LY........S.ER...LS...L.AQLK.C.CR..FSK..PSVLAL....
Retrocopy IVLEKVCWKVKATTAFQFLQLYDSLIHENFSFERRKNLSFERLKAQLKSCQCRIMFSKENPSVLALSTTA

Parental  LEVETLKSIELLEILLLVQKHSKINDADFSYWRELVSKCLAEYSSPECCKPDHKRLVWIVSRRT
          L.....K.IEL.E.....QKHSKIN..D...W.ELV.K.L.EYSS..C.KP....L.WIVS.R.
Retrocopy LQIQAQKFIELMEGVECLQKHSKINCRDLTFWQELVVKRLTEYSSNKCSKPNVQKLKWIVSGRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1962 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1962 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013793	1 retrocopy	retro_amel_960,
Dasypus novemcinctus	ENSDNOG00000005210	1 retrocopy	retro_dnov_2498,
Felis catus	ENSFCAG00000026008	1 retrocopy	retro_fcat_1062,
Macropus eugenii	ENSMEUG00000008707	1 retrocopy	retro_meug_1962 ,
Macaca mulatta	ENSMMUG00000000914	1 retrocopy	retro_mmul_879,
Monodelphis domestica	ENSMODG00000011779	1 retrocopy	retro_mdom_358,
Nomascus leucogenys	ENSNLEG00000008169	1 retrocopy	retro_nleu_933,
Pongo abelii	ENSPPYG00000014867	1 retrocopy	retro_pabe_942,
Pan troglodytes	ENSPTRG00000016196	1 retrocopy	retro_ptro_773,
Sus scrofa	ENSSSCG00000008988	1 retrocopy	retro_sscr_813,
Ictidomys tridecemlineatus	ENSSTOG00000027922	1 retrocopy	retro_itri_1112,
Tupaia belangeri	ENSTBEG00000007671	2 retrocopies	retro_tbel_2258, retro_tbel_38,
Tursiops truncatus	ENSTTRG00000014837	1 retrocopy	retro_ttru_491,