RetrogeneDB ID: | retro_fcat_1062 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:101364717..101365316(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNG2 | ||
Ensembl ID: | ENSFCAG00000026008 | ||
Aliases: | None | ||
Description: | cyclin G2 [Source:HGNC Symbol;Acc:1593] |
Percent Identity: | 59.22 % |
Parental protein coverage: | 58.6 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | LRNAKVEDLRSLTNFFG-SCTETFVLAVNILDRFLALMKVKPK-HLSCIGVCCF-LLAARIVEEECNIPS |
L...K..DLR.LTN..G.SCT.TF.LA.NILDR.LA.....PK..L..IGVCC..LL.A.IVE.EC.I.S | |
Retrocopy | LETGKCRDLRDLTNILGESCT*TFILATNILDRSLAFTTGRPK<DLPHIGVCCV<LLVAGIVEQEC-ISS |
Parental | THDVIRISQCKCTASDIKRMEKIISEKL-HYELEATTALN-FLHLYHTIVLCHTSERKEILSLDKLEAQL |
T..VI.ISQCK.T.SD.K..E.II.EK...YE.E....LN....LY..I.L.H.SERKEI.SL..L.AQL | |
Retrocopy | TPEVIQISQCKYTGSDRK*RENIILEKIQNYEMEQAAVLN>LFYLYKNIIL-HISERKEISSLGNLGAQL |
Parental | KACNCRLTFSKAKPSVLALCLLNLEVETLKSIELLEILLLVKKHSKVNDTEFIYWRELVSKCLAEY |
KA.N..L.FSKAKPSV.AL.LLNLE..T.........LL...KH.K.NDTEF.YWRE.VSKCLAEY | |
Retrocopy | KAYNFQLVFSKAKPSV*ALYLLNLEGQT*VNK*SRIFLLVI-KHLKINDTEFFYWREVVSKCLAEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 71 .11 RPM |
SRP017611_liver | 0 .00 RPM | 12 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013793 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005210 | 1 retrocopy | |
Felis catus | ENSFCAG00000026008 | 1 retrocopy |
retro_fcat_1062 ,
|
Felis catus | ENSFCAG00000027366 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008707 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000914 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011779 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008169 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014867 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016196 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008988 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027922 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007671 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014837 | 1 retrocopy |