RetrogeneDB ID: | retro_meug_2043 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold83168:2..821(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PKM | ||
Ensembl ID: | ENSMEUG00000004506 | ||
Aliases: | None | ||
Description: | pyruvate kinase, muscle [Source:HGNC Symbol;Acc:9021] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 52.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICAT |
GE.GKNIKIISKIENHEGV.RFDEILE.SDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICAT | |
Retrocopy | GEEGKNIKIISKIENHEGVQRFDEILETSDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICAT |
Parental | QMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPVEAVRMQHLIAREAEAAIYHRPLFESL |
QMLESMIKKPRPTRAEGSDVANAVLDGADCIML.GETAKG.YPVEAV.MQHLIAREAEAAI.H...FE.L | |
Retrocopy | QMLESMIKKPRPTRAEGSDVANAVLDGADCIMLCGETAKGNYPVEAVQMQHLIAREAEAAIFHLQVFEEL |
Parental | LRCSSCT-DTADAMAVGAVEASYKCLSPALIVLTESGRSAYQVARYRPRAPIIAVTRSAQAARQAHLHRG |
......T.D..DA.A.GAVEAS.KC.S.A.I.LT.SG.SAYQVA.YRPRAPIIAVTR.A..ARQA..HRG | |
Retrocopy | RNLALMTKDLTDAVAIGAVEASFKCYSGAIIILTKSGKSAYQVAKYRPRAPIIAVTRCAHTARQANIHRG |
Parental | VFPVLCKDPVHESWAEDVDLRVNLAMEVGKARGFFKKDDVVIVLNGWRPGPGFTNTMRVLPVP |
VFPVLCKDPVHESWAEDVDLRVNLAME.GKARGFFKKDDVVIVL.GW.PGPGFTNTMRVLPVP | |
Retrocopy | VFPVLCKDPVHESWAEDVDLRVNLAMEAGKARGFFKKDDVVIVLSGWCPGPGFTNTMRVLPVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013504 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018473 | 1 retrocopy | |
Felis catus | ENSFCAG00000000653 | 1 retrocopy | |
Homo sapiens | ENSG00000067225 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005062 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004506 | 3 retrocopies |
retro_meug_1482, retro_meug_2043 , retro_meug_912,
|
Macaca mulatta | ENSMMUG00000023454 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032294 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013869 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006613 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000007246 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011329 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000010300 | 1 retrocopy |