RetrogeneDB ID: | retro_mmus_1678 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:92717935..92718873(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pkm | ||
Ensembl ID: | ENSMUSG00000032294 | ||
Aliases: | Pkm, AA414905, AL024370, AL024424, Pk-2, Pk-3, Pk3, Pkm2 | ||
Description: | pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591] |
Percent Identity: | 61.8 % |
Parental protein coverage: | 59.51 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | DGLISLQVKEKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRK |
.GLISLQV.EKGA...VTEVENG.SL.SKK...LPG.AVD..A.S.KDIQDL.FG.....DM.F..FI.K | |
Retrocopy | NGLISLQVTEKGAEYFVTEVENGDSLCSKKKETLPGDAVDFLALS*KDIQDLIFGIQEGIDMIFGYFISK |
Parental | AADVHE-VRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGR |
.ADVHE.V....G...K.I..I...E....V.RF..ILEASDG..VA..DLGIEIPA.KVFL.QKM.I.. | |
Retrocopy | VADVHE>VLGKMGKNIKIISKIENHES---VCRFNKILEASDGFIVAHCDLGIEIPAGKVFLVQKMIIRQ |
Parental | CN-RAGK-PVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKG-DYPLEAVRM-QHLIA |
CN...GK.PV...TQ.LE..IKKP.PT.AEGSD.ANAV.DG.DCI.L..ET.KG.DY.LE.V.M..HL.A | |
Retrocopy | CN>KVGKKPVLFTTQKLENKIKKPCPTHAEGSDMANAVVDGEDCIILWEETTKG<DYLLETVHM<AHLSA |
Parental | REAEAAI-YHLQLFEELRRLAPITSDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPII |
.E..AAI...LQLF.ELR.LAPIT.DP.EAA.V..V.ASFKCCSGAIIV.T..GR..H.VA.Y.P..PI. | |
Retrocopy | *EVKAAI<IPLQLF*ELRHLAPITRDPIEAAPVSIVKASFKCCSGAIIVHT-NGRNVH*VAKYHPHSPIN |
Parental | AVTRNPQTARQAHLYRGIFPVLCKDAVLNAWAEDVDLRVNLA |
AV..NP..A....L..GIFPVLC.D.V..AWA.DVDL.VNLA | |
Retrocopy | AVIHNPKVAQETYLCSGIFPVLCNDNVQDAWAKDVDLHVNLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 753 .97 RPM |
SRP007412_cerebellum | 0 .00 RPM | 976 .07 RPM |
SRP007412_heart | 0 .00 RPM | 1282 .44 RPM |
SRP007412_kidney | 0 .00 RPM | 505 .13 RPM |
SRP007412_liver | 0 .00 RPM | 20 .45 RPM |
SRP007412_testis | 0 .00 RPM | 322 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013504 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018473 | 1 retrocopy | |
Felis catus | ENSFCAG00000000653 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005062 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004506 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000023454 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032294 | 8 retrocopies |
retro_mmus_1402, retro_mmus_1678 , retro_mmus_1754, retro_mmus_2065, retro_mmus_2066, retro_mmus_2636, retro_mmus_3509, retro_mmus_854,
|
Pongo abelii | ENSPPYG00000006613 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000011329 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000010300 | 1 retrocopy |