RetrogeneDB ID: | retro_meug_2077 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold87658:5858..6276(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UNG | ||
Ensembl ID: | ENSMEUG00000015792 | ||
Aliases: | None | ||
Description: | uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572] |
Percent Identity: | 66.2 % |
Parental protein coverage: | 68.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EQLERIQRNKEAALLRLASRNVPAGFGESWKRPLSAEFGKPYFLQLM-GFV-AEERKRYTVYPPADQVFT |
E.L...Q.N...ALL..A..NVP.GF.ES.K..LS.E.GKPYF..LM.G...AEE.K..T..P.ADQVFT | |
Retrocopy | EPLAWSQKNLAPALL*FALLNVPKGFRES*KWQLSTELGKPYFIKLM<GIINAEEGKDHTICPLADQVFT |
Parental | WTQLCEIRDVKVVILGQDPYHGPNQAHGL-CFSVQRPVPPPPSLENIYKELSTDIEGFDHPGHGDLSGWA |
WTQLCEIRDVK.VILGQD.YH.P.QA..L...SVQRPVPPPPSLENIYKELS.DIE.F.H..H..L.GWA | |
Retrocopy | WTQLCEIRDVKMVILGQDSYHRPSQAQRL<ILSVQRPVPPPPSLENIYKELSIDIEDFTHLDHEVLCGWA |
Parental | RQ |
RQ | |
Retrocopy | RQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016525 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011144 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010134 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000004634 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005335 | 2 retrocopies | |
Equus caballus | ENSECAG00000008080 | 1 retrocopy | |
Felis catus | ENSFCAG00000008349 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015792 | 3 retrocopies |
retro_meug_1594, retro_meug_1877, retro_meug_2077 ,
|
Myotis lucifugus | ENSMLUG00000010755 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006957 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003463 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001442 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003145 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007441 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004929 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005419 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009938 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006894 | 1 retrocopy |