Parental gene:

UNG, ENSDNOG00000005335

Aliases:None
Description:uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1786:143749..162892(+)


>ENSDNOG00000005335
GCCAGCCCCGCCAAGAAGGCCCGGGCCGGGCCCGGCGAGTCGGACACGCCGCCCACCTCGCCGCTGAGCCCCGAGCAGTT
GGTCCGGATCCAGAGGAACAAGGCCGCGGCCCTGCTGAGGCTCGCAGCCCGCAATGTGCCCGTGGGTTTCGGGGAGACTT
GGAAGAAGCAACTCAGCGGAGAGTTCGGGAAACCTTATTTCATAAAGCTAATGGGATTTGTTTCAGAAGAAAGAAAACAT
TATACTGTTTATCCACCCCCACACCAAGTCTTCACGTGGACCCAGATGTGTGATGTAAGAGATNNNNNNNNNNNNNNNNN
NNNNCAGGATCCATATCATGGACCCAATCAAGCTCATGGGCTCTGCTTCAGTGTTCAAAGACCTGTTCCACCTCCACCCA
GTCTGGAAAACATTTATAAAGAGCTATCTACAGACATAGATGGTTTTGTTCATCCTGGTCATGGAGATTTATCTGGGTGG
GCCAAACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGGCACCACGTGCTACAGACAGCTCATCCCTCCCCGTTGTCGGTGTAC
AGAGGATTCTTTGGATGTAGACATTTTTCTAAAACCAATGAGCTGCTGCAGAAGTCTGGCAAGAAACCCATCAATTGGAA
GGAGCTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 13 .42 RPM
SRP012922_cerebellum 3 .02 RPM
SRP012922_heart 5 .80 RPM
SRP012922_kidney 3 .56 RPM
SRP012922_liver 3 .10 RPM
SRP012922_lung 11 .00 RPM
SRP012922_quadricep_muscle 10 .39 RPM
SRP012922_spleen 8 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016525 ortholog_one2one 1 retrogene
retro_amel_153,
Canis familiaris ENSCAFG00000011144 ortholog_one2one 1 retrogene
retro_cfam_1567,
Callithrix jacchus ENSCJAG00000010134 ortholog_one2many 2 retrogenes
retro_cjac_1467, retro_cjac_520,
Cavia porcellus ENSCPOG00000004634 ortholog_one2many 3 retrogenes
retro_cpor_1339, retro_cpor_6, retro_cpor_863,
Equus caballus ENSECAG00000008080 ortholog_one2one 1 retrogene
retro_ecab_747,
Felis catus ENSFCAG00000008349 ortholog_one2one 1 retrogene
retro_fcat_445,
Macropus eugenii ENSMEUG00000015792 ortholog_one2one 3 retrogenes
retro_meug_1594, retro_meug_1877, retro_meug_2077,
Myotis lucifugus ENSMLUG00000010755 ortholog_one2one 3 retrogenes
retro_mluc_1305, retro_mluc_2060, retro_mluc_989,
Macaca mulatta ENSMMUG00000006957 ortholog_one2one 2 retrogenes
retro_mmul_1564, retro_mmul_2115,
Mustela putorius furo ENSMPUG00000003463 ortholog_one2one 1 retrogene
retro_mputfur_1592,
Nomascus leucogenys ENSNLEG00000001442 ortholog_one2one 3 retrogenes
retro_nleu_1325, retro_nleu_1950, retro_nleu_2802,
Oryctolagus cuniculus ENSOCUG00000003145 ortholog_one2one 1 retrogene
retro_ocun_1767,
Otolemur garnettii ENSOGAG00000007441 ortholog_one2one 2 retrogenes
retro_ogar_1593, retro_ogar_2716,
Pongo abelii ENSPPYG00000004929 ortholog_one2one 3 retrogenes
retro_pabe_1354, retro_pabe_1355, retro_pabe_2792,
Pan troglodytes ENSPTRG00000005419 ortholog_one2one 1 retrogene
retro_ptro_1108,
Sus scrofa ENSSSCG00000009938 ortholog_one2one 1 retrogene
retro_sscr_1202,
Ictidomys tridecemlineatus ENSSTOG00000006894 ortholog_one2one 1 retrogene
retro_itri_661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_627 65.45 60.59
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2. retro_dnov_1001 87.50 56.51
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Download FASTA sequences of all ENSDNOG00000005335 retrocopies