RetrogeneDB ID: | retro_meug_670 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold155827:4994..5740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL8 | ||
Ensembl ID: | ENSMEUG00000013824 | ||
Aliases: | None | ||
Description: | ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] |
Percent Identity: | 66.53 % |
Parental protein coverage: | 97.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGRVIRGQRKGAGSVFRAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFK |
M..V..G.R.G....F.A.VKHRKGA.KL.AVDF.E.HGYI..I.KD.IHDPG.GAPL...AF.DPY..K | |
Retrocopy | MCHVTQGKRNGTVYIFHADVKHRKGASKLWAVDFTEWHGYINNILKDVIHDPG*GAPLVNAAFQDPYQLK |
Parental | KR-TELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISH |
KR.TELFIA.E.I.T.QF.Y..KKAQLNI.N.LP.GTMP.GTIVCC.EEK..D.GKL..AS.NY.TVISH | |
Retrocopy | KR<TELFIATEDIQTAQFIYYDKKAQLNIANILPFGTMPKGTIVCCFEEKLEDWGKLIHAS*NYTTVISH |
Parental | NPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEH |
.PETKK..VKLPSG.KK.I...NR.V.G.VAGGG.IDKPILKAG.AYHKYK.KRN.WP.V.G.AM.P.EH | |
Retrocopy | SPETKKIQVKLPSGFKKAITE-NRTVIGFVAGGGHIDKPILKAGHAYHKYKTKRNSWPHVHGMAMKPMEH |
Parental | PFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTK |
PF.GG.HQHI.KPS.I.RDA.A..KV.L.AA..T..L.G.. | |
Retrocopy | PFRGGSHQHIEKPSAIQRDALAE*KVSLLAAHYTSHLQGIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000017933 | 1 retrocopy | |
Bos taurus | ENSBTAG00000026327 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021388 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000013824 | 9 retrocopies |
retro_meug_1116, retro_meug_1354, retro_meug_1757, retro_meug_1817, retro_meug_1881, retro_meug_670 , retro_meug_941, retro_meug_960, retro_meug_974,
|
Macaca mulatta | ENSMMUG00000013379 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004283 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000006022 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024716 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048523 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013568 | 2 retrocopies |