RetrogeneDB ID:

retro_meug_884

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold21946:19618..20089(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SLC7A6OS
Ensembl ID:ENSMEUG00000003614
Aliases:None
Description:solute carrier family 7, member 6 opposite strand [Source:HGNC Symbol;Acc:25807]


Retrocopy-Parental alignment summary:






>retro_meug_884
CCCAAGAAATCTCATCCAGATGTCATAATCTCCAAGTCAGTAAGGGTGATCCGTGAGCCACACGCCACCTCCGAGGGTGG
CAAAGGAACGGAGCACCGAGGGAAGGAAGAAGAAGAGGAAGTCTGTGACCTGAAGTACATGGAGACGTCTACACCCGGAT
GGACTGAAAGCAACCTCTGTCACCAGCCCTACACTCAGGAGTGCCAGCTGGACGCTGATGATCATCCAGCGGAGGAAACT
GAAGACGATGAGGATGAAGAAGATGAAAACAGTGAGAATCACTGGTGTAACGAGTACCCTGATGAGGAAGAAGGAAGCAG
TGACACGGGGAGCACAGGAGCGTCTGACGAAGATTATGGCAGTTTCAGTGATGACGAAAGCAGTGTCATTAGACCGAGGA
AATGGAACAAATATCCCTGGGATGTGCTAAAGGAGTTTGAGTATGACGGCTTCCAGGACTTCGACTCAGAG

ORF - retro_meug_884 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.34 %
Parental protein coverage: 58.94 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPPKSDPDVILCNSVRMIRERLAISKDGKGTNHREKEDEY-VYDIYYMETSTPGWIESILSVQPYSEEWEL
P.KS.PDVI...SVR.IRE..A.S..GKGT.HR.KE.E..V.D..YMETSTPGW.ES.L..QPY..E..L
RetrocopyPKKSHPDVIISKSVRVIREPHATSEGGKGTEHRGKEEEEEVCDLKYMETSTPGWTESNLCHQPYTQECQL
ParentalVADDHQAEEIDDDDDE-DENSENHWRNEYPDEEEGSSDRESTRGSDEEYGSFSDEESSVIRPRKWNKYPY
.ADDH.AEE..DD.DE.DENSENHW.NEYPDEEEGSSD..ST..SDE.YGSFSD.ESSVIRPRKWNKYP.
RetrocopyDADDHPAEETEDDEDEEDENSENHWCNEYPDEEEGSSDTGSTGASDEDYGSFSDDESSVIRPRKWNKYPW
ParentalDVLKEFEYDSSQDLDSD
DVLKEFEYD..QD.DS.
RetrocopyDVLKEFEYDGFQDFDSE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_884 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_884 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000079581 retrocopy
Macropus eugenii ENSMEUG00000003614 6 retrocopies
Myotis lucifugus ENSMLUG000000059531 retrocopy



Copyright © RetrogeneDB 2014-2017