RetrogeneDB ID: retro_mluc_1059

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429791:7299187..7299704(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAC1
• Ensembl ID: ENSMLUG00000009701
• Aliases: None
• Description: None

Sequence

>retro_mluc_1059
GCTGTAGGTAAAACTTGCCTACTGATCAATTATACAACCAATGCATTTCCTGGATATATTCTTGGAGAATATATTCCCAC
TGCCTTTGACAACTATTCTGCCAATGTTATGGCAAATAGAAAATCGGTGTATTTGGGCTTATGGGATATTGCTGGACAAG
AAGATTATGACAGAGTATGTCCCCTGTTTTACCCGCAGACAGATGTATTTTTAATTTGCTTTTCTCTTGTGAGTCCTGTG
TCATTTGAAAACATTTCTACAAAGCGGTATCCTGAAGTGTGACACCATTGTGCCAACAATCCCATCATCCTGGTGGGGAC
TAAGCTTGATCTTAGGGATGCGAAAGACACAATTGAGAAACTGAAGGAGAAGTTGACACTATCACCTACTCGCAGGGCTT
AGCCATGGCTAAGGAGATGGTGCTGTAAAGTACCTGGAGTGCTTGGCTCTCACACCGAGAGGCCTCAAGACAGTGTTCGA
TGAGGCTATTCGAGCTGTTCTCTGCCCACCTCCCGTC

Alignment

ORF - retro_mluc_1059 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.82 %
• Parental protein coverage: 88.54 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF
          AVGKTCLLI.YTTNAFP....GEYIPT.FDNYSANVM...K.V.LGLWD.AGQEDYDR..PL.YPQTDVF
Retrocopy AVGKTCLLINYTTNAFPGYILGEYIPTAFDNYSANVMANRKSVYLGLWDIAGQEDYDRVCPLFYPQTDVF

Parental  LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-PITYPQGLAMAK
          LICFSLVSP.SFEN...K.YPEV.HHC.N.PIILVGTKLDLRD.KDTIEKLKE.KLT..ITY.QGLAMAK
Retrocopy LICFSLVSPVSFENISTKRYPEV*HHCANNPIILVGTKLDLRDAKDTIEKLKE-KLT<TITYSQGLAMAK

Parental  EI-GAVKYLECSALTQRGLKTVFDEAIRAVLCPPPV
          E..GAVKYLEC.ALT.RGLKTVFDEAIRAVLCPPPV
Retrocopy EM<GAVKYLECLALTPRGLKTVFDEAIRAVLCPPPV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1059 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000011361	2 retrocopies	retro_fcat_1632, retro_fcat_717,
Gorilla gorilla	ENSGGOG00000026733	2 retrocopies	retro_ggor_2110, retro_ggor_217,
Loxodonta africana	ENSLAFG00000012844	1 retrocopy	retro_lafr_818,
Myotis lucifugus	ENSMLUG00000001567	1 retrocopy	retro_mluc_595,
Myotis lucifugus	ENSMLUG00000009701	1 retrocopy	retro_mluc_1059 ,
Myotis lucifugus	ENSMLUG00000012668	2 retrocopies	retro_mluc_326, retro_mluc_860,
Myotis lucifugus	ENSMLUG00000013365	4 retrocopies	retro_mluc_1076, retro_mluc_1864, retro_mluc_2456, retro_mluc_905,
Pan troglodytes	ENSPTRG00000018910	4 retrocopies	retro_ptro_1288, retro_ptro_3044, retro_ptro_3274, retro_ptro_36,
Tupaia belangeri	ENSTBEG00000007272	4 retrocopies	retro_tbel_1796, retro_tbel_2564, retro_tbel_4296, retro_tbel_9,
Xenopus tropicalis	ENSXETG00000027593	1 retrocopy	retro_xtro_1,