Parental gene:

RAC1, ENSPTRG00000018910

Aliases:None
Description:Pan troglodytes ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246381]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:4980452..5009957(-)


>ENSPTRG00000018910
ATGCAGGCCATCAAGTGTGTGGTGGTGGGAGACGGAGCTGTAGGTAAAACTTGCCTACTGATCAGTTACACAACCAATGC
ATTTCCTGGAGAATATATCCCTACTGTCTTTGACAATTATTCTGCCAATGTTATGGTAGATGGAAAACCGGTGAATCTGG
GCTTATGGGATACAGCTGGACAAGAAGATTATGATAGATTACGCCCCCTATCCTATCCGCAAACAGTTGGAGAAACGTAC
GGTAAGGATATAACCTCCCGGGGCAAAGACAAGCCGATTGCCGATGTGTTCTTAATTTGCTTTTCCCTTGTGAGTCCTGC
ATCATTTGAAAATGTCCGTGCAAAGTGGTATCCTGAGGTGCGGCACCACTGTCCCAACACTCCCATCATCCTAGTGGGAA
CTAAACTTGATCTTAGGGATGATAAAGACACGATCGAGAAACTGAAGGAGAAGAAGCTGACTCCCATCACCTATCCGCAG
GGTCTAGCCATGGCTAAGGAGATTGGTGCTGTAAAATATCTGGAGTGCTCGGCGCTCACACAGCGAGGCCTCAAGACAGT
GTTTGACGAAGCGATCCGAGCAGTCCTCTGCCCACCTCCCGTGAAGAAGAGGAAGAGAAAATGCCTGCTGTTGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 185 .02 RPM
SRP007412_cerebellum 247 .07 RPM
SRP007412_heart 136 .81 RPM
SRP007412_kidney 172 .24 RPM
SRP007412_liver 129 .69 RPM
SRP007412_testis 92 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009233 possible_ortholog 2 retrogenes
retro_btau_1601, retro_btau_332,
Canis familiaris ENSCAFG00000015716 possible_ortholog 1 retrogene
retro_cfam_496,
Felis catus ENSFCAG00000011361 possible_ortholog 2 retrogenes
retro_fcat_1632, retro_fcat_717,
Homo sapiens ENSG00000136238 ortholog_one2many 6 retrogenes
retro_hsap_1256, retro_hsap_1925, retro_hsap_28, retro_hsap_3036, retro_hsap_3072, retro_hsap_4910,
Gorilla gorilla ENSGGOG00000026733 ortholog_one2many 2 retrogenes
retro_ggor_2110, retro_ggor_217,
Loxodonta africana ENSLAFG00000012844 possible_ortholog 1 retrogene
retro_lafr_818,
Myotis lucifugus ENSMLUG00000009701 possible_ortholog 1 retrogene
retro_mluc_1059,
Macaca mulatta ENSMMUG00000021075 possible_ortholog 4 retrogenes
retro_mmul_1310, retro_mmul_1964, retro_mmul_2642, retro_mmul_721,
Mus musculus ENSMUSG00000001847 ortholog_one2many 2 retrogenes
retro_mmus_1372, retro_mmus_234,
Oryctolagus cuniculus ENSOCUG00000009956 possible_ortholog 1 retrogene
retro_ocun_305,
Pan troglodytes ENSPTRG00000006424 other_paralog 4 retrogenes
retro_ptro_1643, retro_ptro_2091, retro_ptro_2971, retro_ptro_910,
Rattus norvegicus ENSRNOG00000001068 ortholog_one2many 1 retrogene
retro_rnor_230,
Ictidomys tridecemlineatus ENSSTOG00000006784 ortholog_one2one 1 retrogene
retro_itri_1503,
Tupaia belangeri ENSTBEG00000007272 possible_ortholog 4 retrogenes
retro_tbel_1796, retro_tbel_2564, retro_tbel_4296, retro_tbel_9,
Tarsius syrichta ENSTSYG00000001618 ortholog_one2one 2 retrogenes
retro_tsyr_2027, retro_tsyr_2068,
Xenopus tropicalis ENSXETG00000027593 ortholog_one2many 1 retrogene
retro_xtro_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_36 70.31 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_1288 68.03 74.48
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_3044 77.95 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_3274 93.66 73.96
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000018910 retrocopies