RetrogeneDB ID: retro_mluc_595

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:7537588..7538001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029658
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RHOQ
• Ensembl ID: ENSMLUG00000001567
• Aliases: None
• Description: None

Sequence

>retro_mluc_595
GAAGACTATGATCGACTGCGGCCTTTATCTTATCCAATGACTGATGTCTTCCTTATATGCTTCTCTGTGGTGAATCCAGC
CTCATTTCAAAATGTGAAAGAGGAATGGATACCAGAACTTACGGAATACGCACCAAATGTACCCTTCTTATTAATAGGAA
CTCAGATTGATCTCCGCGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAGAAAAGCCTATATGTGTGGAACAA
GGACAGAAACTAGCAAAAGAGATAGGAGCGTGCTGCTATGTGGAATGTTCAGCTTTAACCCAGAAGGGATTGAAGACTGT
TTTAATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACATACAGTAAAAAAAAGAATAGGATCAAGATGTATAAACTG
TTGCTTGATTACG

Alignment

ORF - retro_mluc_595 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.24 %
• Parental protein coverage: 82.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND
          EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW.PEL.EYAPNVPFLLIGTQIDLRDDPKTLARLND
Retrocopy EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWIPELTEYAPNVPFLLIGTQIDLRDDPKTLARLND

Parental  MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV-FDEAIIAILTPKKHTVKKRIGSRCINCCLIT
          MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV.F.EAIIAILTPKKHT....IGSRCINCCLIT
Retrocopy MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV<FNEAIIAILTPKKHTXXXXIGSRCINCCLIT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_595 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006082	1 retrocopy	retro_amel_383,
Choloepus hoffmanni	ENSCHOG00000000549	3 retrocopies	retro_chof_2030, retro_chof_457, retro_chof_914,
Erinaceus europaeus	ENSEEUG00000015226	1 retrocopy	retro_eeur_129,
Echinops telfairi	ENSETEG00000019234	3 retrocopies	retro_etel_1468, retro_etel_596, retro_etel_672,
Felis catus	ENSFCAG00000015608	1 retrocopy	retro_fcat_795,
Myotis lucifugus	ENSMLUG00000001567	1 retrocopy	retro_mluc_595 ,
Myotis lucifugus	ENSMLUG00000009701	1 retrocopy	retro_mluc_1059,
Myotis lucifugus	ENSMLUG00000012668	2 retrocopies	retro_mluc_326, retro_mluc_860,
Myotis lucifugus	ENSMLUG00000013365	4 retrocopies	retro_mluc_1076, retro_mluc_1864, retro_mluc_2456, retro_mluc_905,
Pteropus vampyrus	ENSPVAG00000013691	1 retrocopy	retro_pvam_611,
Rattus norvegicus	ENSRNOG00000015415	1 retrocopy	retro_rnor_473,
Sus scrofa	ENSSSCG00000008439	1 retrocopy	retro_sscr_102,
Tursiops truncatus	ENSTTRG00000011892	1 retrocopy	retro_ttru_805,