RetrogeneDB ID: retro_mluc_1106

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429796:429258..429708(+)
• Located in intron of: ENSMLUG00000027295

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ISCU
• Ensembl ID: ENSMLUG00000007942
• Aliases: None
• Description: None

Sequence

>retro_mluc_1106
CTGGCCTCCAAGCCTCCCAGCCCAGGAGAGCATCTGTCAGCTCTGGCCGGCTCTATCACAGGAATGTCATTGATCATGAT
GAAAATCCCAGAAATGTGGAGTTTCTTGACAAGACATCTAAAAATGTTGGAGGATCTGTGGGGGCTCCAGCATGTAGTAA
TGTAATGAAATTATAGATTCAAGTGGATGGAAAGGGGAAGATCGTGGATACCAAGAATAAAACATTTGGCTATGGTTCTG
CAACTGCCTCCAGCTCATTGGCCACTGAACGGCTAAAAAAGGAAGACAGTGAAGGAAGCCTTGACCATCAACAACACAAA
TATCATCAAGGACCTCTGCTTTCTCCCTGTGGAACTGCACTGTACCACACTGGCTGAAGATACAATCAAGGTCACCCTGG
CTAATTACAAACTGAAACAAGAATCCAAGAAAGGCAAGGTGAAGAAGAAA

Alignment

ORF - retro_mluc_1106 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.01 %
• Parental protein coverage: 89.88 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LLRTPRLPPRELSAPA-RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEEGKI
          L...P..P...LSA.A.RLYH..V.DH.ENPRNV..LDKTSKNVG.G.VGAPAC..VMKL.IQVD..GKI
Retrocopy LASKPPSPGEHLSALA<RLYHRNVIDHDENPRNVEFLDKTSKNVG-GSVGAPACSNVMKL*IQVDGKGKI

Parental  VDARFKTFGCGSAIASSSLATEWVKG-KTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYK
          VD...KTFG.GSA.ASSSLATE..K..KTV.EALTI.NT.I.K.LC..PV.LHC..LAED.IK..LA.YK
Retrocopy VDTKNKTFGYGSATASSSLATERLKK>KTVKEALTINNTNIIKDLCFLPVELHCTTLAEDTIKVTLANYK

Parental  LKQEPKKGEAARE
          LKQE.KKG.....
Retrocopy LKQESKKGKVKKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1106 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011773	2 retrocopies	retro_chof_229, retro_chof_2698,
Callithrix jacchus	ENSCJAG00000015374	2 retrocopies	retro_cjac_1584, retro_cjac_1644,
Myotis lucifugus	ENSMLUG00000007942	3 retrocopies	retro_mluc_1106 , retro_mluc_1939, retro_mluc_2342,
Monodelphis domestica	ENSMODG00000002828	1 retrocopy	retro_mdom_1924,
Sorex araneus	ENSSARG00000012942	1 retrocopy	retro_sara_322,
Xenopus tropicalis	ENSXETG00000027428	1 retrocopy	retro_xtro_66,