RetrogeneDB ID: retro_mluc_2342

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430229:594215..594720(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027418
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ISCU
• Ensembl ID: ENSMLUG00000007942
• Aliases: None
• Description: None

Sequence

>retro_mluc_2342
AAGATGGCGGTGACTGGAGCGGGCTGTCTGCGGCGGGCTGCCTCAGCCCTGCTGCTCCGGACCCCGCGCCTGTCCCCCCG
GGAGCTGTCAGCCCCCGCCCGGCTCCATCACAAGAAGGTTGTCGATCATTATGAAAATCCCAGAAACGTGGGGTCTCTTG
ACAAGACATCCAAAAATGTTGGGACTGGATTGGTGGGGGCTCCAGCGTGTGGCGATGTGATGAAATTACAGATCCAGGTG
GATGAGAAGGGGAAGATCGTGGACGCCAGGTTTAAAACATTTGGCTGTGGCTCCGCAATCGCCTCCAGCTCGCTGGCCAC
CGAATGGGTGAAAGGAAAGACGGTGGAGGAAGCCTTGACCATCAAGAACACAGACATCGCCAAGGAGCTGTGCCTGCCCC
CCCGTGAAGCTGCACTGCTCCATGCTGGCTGAAGATGCGATCCAGGCCGCCCTGGCTGATTACAAACTGAAGCAAGAACC
CAAGAAAGGAGAGGCGGAGAGGGAA

Alignment

ORF - retro_mluc_2342 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.67 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KMAATGAGRLRRAASVLLLRTPRLPPRELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPAC
          KMA.TGAG.LRRAAS.LLLRTPRL.PRELSAPARL.HKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPAC
Retrocopy KMAVTGAGCLRRAASALLLRTPRLSPRELSAPARLHHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPAC

Parental  GDVMKLQIQVDEEGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPP-VKLHC
          GDVMKLQIQVDE.GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPP.VKLHC
Retrocopy GDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPP>VKLHC

Parental  SMLAEDAIKAALADYKLKQEPKKGEAARE
          SMLAEDAI.AALADYKLKQEPKKGEA.RE
Retrocopy SMLAEDAIQAALADYKLKQEPKKGEAERE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2342 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011773	2 retrocopies	retro_chof_229, retro_chof_2698,
Callithrix jacchus	ENSCJAG00000015374	2 retrocopies	retro_cjac_1584, retro_cjac_1644,
Myotis lucifugus	ENSMLUG00000007942	3 retrocopies	retro_mluc_1106, retro_mluc_1939, retro_mluc_2342 ,
Monodelphis domestica	ENSMODG00000002828	1 retrocopy	retro_mdom_1924,
Sorex araneus	ENSSARG00000012942	1 retrocopy	retro_sara_322,
Xenopus tropicalis	ENSXETG00000027428	1 retrocopy	retro_xtro_66,