RetrogeneDB ID: | retro_mluc_1152 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429799:8267950..8269201(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000025722 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM39 | ||
Ensembl ID: | ENSMLUG00000003000 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.09 % |
Parental protein coverage: | 79.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRE |
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKE.KRSRDRERK.SKS.E | |
Retrocopy | MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKEWKRSRDRERKTSKSCE |
Parental | RKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE |
RKRSRSKERRRSRSRSRDRRFRG.YRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE | |
Retrocopy | RKRSRSKERRRSRSRSRDRRFRGHYRSPYSGPKFNSAIRGKIGLPHSVKLSRRRSRSKSPFRKDKSPVRE |
Parental | PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA |
PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDR.SRRSKGIAYVEFVDVSSVPLA | |
Retrocopy | PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRKSRRSKGIAYVEFVDVSSVPLA |
Parental | IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ |
IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQK.SAGPMRLYVGSLH..ITEDMLRGIFEPFGRIESIQ | |
Retrocopy | IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKESAGPMRLYVGSLHLSITEDMLRGIFEPFGRIESIQ |
Parental | LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGID |
LMMDSETG.SKGYGFITFSDSECAKKALEQLNGF.L.GRPMKVGHVTERTDASSASSFLDSDELERTGID | |
Retrocopy | LMMDSETGQSKGYGFITFSDSECAKKALEQLNGFQLVGRPMKVGHVTERTDASSASSFLDSDELERTGID |
Parental | LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLAT |
LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAV.........QT..S....A......A. | |
Retrocopy | LGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVSEFSFVTDLQTRLSQQTEASALAAAAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000003950 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000238 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003000 | 1 retrocopy |
retro_mluc_1152 ,
|
Myotis lucifugus | ENSMLUG00000012923 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031284 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011227 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002183 | 2 retrocopies |