RetrogeneDB ID: retro_mluc_227

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:513840..515382(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013032
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: PUF60
• Ensembl ID: ENSMLUG00000000238
• Aliases: None
• Description: None

Sequence

>retro_mluc_227
ATGGCGACGGTGGCCTTAGCTCTCGGGACAGACTCCATCAAGATAGAGAACGGGCAGAGCACAGCCACAAAGCTGGGACT
GCCTCCTCTGACGCCCGAGCAGCAGGAGGCCCTCCAGAAGGCCAAGAAGTACGCCATGGAGCAGAGCATCAAGAGTGTGC
TGGTGAAGCAGACTATCGAGCACCAGCAGCAGCAGCTTACCAACATGCAGATGGCAGCTCAGCGGCAGCGGACACTGGCC
GTCATGTGCCGGGTCTACGTGGGCTCCATCTCCTATGAGCTGGGTGAGGACACCATTCGCCAGGCCTTTGCCCCCTTTGG
GCCCATCAAGAACATTGACATGTCCTGGGACTCCGTCACCATGAAGCACAAGGGTTTTGCCTTTGTGGAGTACGAGGTCC
CAGAGGCTGCGCAGCTGGCCTTGGACCAGATGAACTCAGTGATGCTGGGCGGCAGGAACATCAAGGTGGGCAGGCCCAGC
AACATAGGGCAGGCCCAGCCCATCATAGAGCAGCTGGCGGAAGAGGCACGTGCCTTCAACCGAATCTATGTGGCTTCTGT
GCATCAGGACCTCTCAGATGATGACATCAAGAGTGTGTTTGAGGCCTTTGGCAAGATCAGATCTTGCATGCTGGCCCGCG
ACCCCACAACCGGCAAGCACAAGGGCCATGGTTTCATTGAGTATGAGAAGGCCCAGTCGTCTCAAGATGCCGTGTCTTCC
ATGAACCTCTTTGACCTGGGTGGCCAGTATTTGCGGGTGGGCAAGGCTGTCACACCCCCTATGCACCTGCTTACACCTGC
CACACCTGGAGGCCTCCCGCCAGCTGCTGCTGTTGCTGCAGCTGCAGCCACAGCCAAGATTACGGCTCAGGAAGCAGTGG
CTGGAGCAGCGGTGTTGGGTACCCTGGCCACCCCTGGACTGGTTTCCCCTGCACTGACTCTGGCCCAGCCCTTGGGAGCT
TTACCTCAGGCTGTCATGGCTGCCCAGGCCCCAGGAGTCATCACAGGTGTGACCCCAGCCCGGCCTCCCATTCCTGTCAC
CATCCCCTCTGTGGGAGTGGTGAACCCCATCCTTGCCAGCCCTCCGACGCTGGGCCTCCTGGAGCCCAAGAATGAGGAGG
AGGAGGAGGAGCTGTTCCCCGAGTCCGAGCGGCCGGAGATGCTGAGTGAGCAGGAGCACGTGAACATCTCTGGCAGCAGC
GCCCGCCACATGGTCATGCAGAAGCTGCTCCGCAAGCAGGAGTCCACAGTGATGGTTCTGCGCAACATGGTGGACCCCAA
GGACATCGATGATGACCTGGAGGGGGAGGTGACCGAGGAGTGCAGCAAGTTCGGGGCCGTCAACTGCGTCATCATCTACC
AGGAGAAGCAAGGCGAGGAGGAGGATGCCGAGATCATCGTCAAGATCTTCGTGGAGTTCTCCATGGCCTCCGAGACTCAC
AAGGCCATCCAGGCCCTCAATGGGCGCTGGTACGCCGGCCGCAAGGTGGTGGCTGAAGTGTACAACCAGGAGCGTTTTGA
TAACAGTGACCTCTCTGCGTGA

Alignment

ORF - retro_mluc_227 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.03 %
• Parental protein coverage: 79.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA
          MAAQRQR.LA.MCRVYVGSI.YELGEDTIRQAFAPFGPIK.IDMSWDSVTMKHKGFAFVEYEVPEAAQLA
Retrocopy MAAQRQRTLAVMCRVYVGSISYELGEDTIRQAFAPFGPIKNIDMSWDSVTMKHKGFAFVEYEVPEAAQLA

Parental  LEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCT
          L.QMNSVMLGGRNIKVGRPSNIGQAQPII.QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI.SC.
Retrocopy LDQMNSVMLGGRNIKVGRPSNIGQAQPIIEQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIRSCM

Parental  LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAA
          LARDPTTGKHKG.GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM.LLTPATPGGLPPAAAVAA
Retrocopy LARDPTTGKHKGHGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMHLLTPATPGGLPPAAAVAA

Parental  AAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGVTPARPPIPVTIPS
          AAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGVTPARPPIPVTIPS
Retrocopy AAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGVTPARPPIPVTIPS

Parental  VGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLL--PQSTVMVL
          VGVVNPILASPPTLGLLEPK.E.EEEELFPESERPEMLSEQEH..ISGSSARHMVMQKLL....STVMVL
Retrocopy VGVVNPILASPPTLGLLEPKNEEEEEELFPESERPEMLSEQEHVNISGSSARHMVMQKLLRKQESTVMVL

Parental  RNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRW
          RNMVDPKDIDDDLEGEVTEEC.KFGAVN.VIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRW
Retrocopy RNMVDPKDIDDDLEGEVTEECSKFGAVNCVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRW

Parental  FAGRKVVAEVYDQERFDNSDLSA
          .AGRKVVAEVY.QERFDNSDLSA
Retrocopy YAGRKVVAEVYNQERFDNSDLSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_227 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000238	1 retrocopy	retro_mluc_227 ,
Myotis lucifugus	ENSMLUG00000003000	1 retrocopy	retro_mluc_1152,
Myotis lucifugus	ENSMLUG00000012923	1 retrocopy	retro_mluc_2430,