RetrogeneDB ID: | retro_mluc_1161 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429801:1661879..1662348(-) | ||
Located in intron of: | ENSMLUG00000010515 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP1B | ||
Ensembl ID: | ENSMLUG00000024811 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.12 % |
Parental protein coverage: | 77.89 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | VEEHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAIN-FLRMSARV |
...HLFNLKF..KE.NR.AKKCDKEE...KAKIKKAIQK.NTEVA.IHAENA..QKN.AIN.FL.....V | |
Retrocopy | LKKHLFNLKFHVKEFNRYAKKCDKEE*T*KAKIKKAIQKDNTEVAKIHAENAVSQKN*AIN<FLENECQV |
Parental | DAVAAR--VQTAVTMGKVTKS-MAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDT-MSS |
.....R...QTAVTMGKVTKS..AGVV.SMDATLRS.NL...SAL..KFEH.FETLD.QTQQ.ED...S. | |
Retrocopy | *CCSSRTRIQTAVTMGKVTKS>LAGVVNSMDATLRSKNLKNTSALINKFEHPFETLDFQTQQIEDN>SST |
Parental | TTTLTTPQSQVDMLLQEMAD |
T.T.T.PQ.QVDMLL.E.AD | |
Retrocopy | T-TITSPQNQVDMLLLEVAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000026660 | 1 retrocopy | |
Equus caballus | ENSECAG00000018625 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025604 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026457 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015250 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024811 | 3 retrocopies |
retro_mluc_1161 , retro_mluc_1344, retro_mluc_673,
|
Monodelphis domestica | ENSMODG00000004273 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031242 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000018556 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020505 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001416 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002323 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016903 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011727 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008066 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000854 | 2 retrocopies |