RetrogeneDB ID: | retro_mluc_673 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429771:6229490..6229881(+) | ||
Located in intron of: | ENSMLUG00000017791 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP1B | ||
Ensembl ID: | ENSMLUG00000024811 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.18 % |
Parental protein coverage: | 65.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VSPVEEHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAIN-FLRMS |
.S..E.HLFNLKF.AKEL.R.AKKC.KE........KKAIQKGN.EVA.IHA.NAI.QKNQA.N.FL... | |
Retrocopy | MSNMEKHLFNLKFEAKELSRSAKKCNKEXXXXXXXXKKAIQKGNMEVAKIHAKNAIHQKNQAVN<FLENE |
Parental | AR-VDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQ |
.R.VD..AARVQT.VTMGKVTKSMA.VVK.MDATL..MNLEK.SALMDKFEHQF.TLD.QTQQ | |
Retrocopy | CR<VDVMAARVQTVVTMGKVTKSMARVVKLMDATLKTMNLEKTSALMDKFEHQFKTLDLQTQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000026660 | 1 retrocopy | |
Equus caballus | ENSECAG00000018625 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025604 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026457 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015250 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024811 | 3 retrocopies |
retro_mluc_1161, retro_mluc_1344, retro_mluc_673 ,
|
Monodelphis domestica | ENSMODG00000004273 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031242 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000018556 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020505 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001416 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002323 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016903 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011727 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008066 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000854 | 2 retrocopies |