RetrogeneDB ID: | retro_pvam_208 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1883:121165..121744(+) | ||
Located in intron of: | ENSPVAG00000009393 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP1B | ||
Ensembl ID: | ENSPVAG00000001416 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 1B [Source:HGNC Symbol;Acc:24287] |
Percent Identity: | 87. % |
Parental protein coverage: | 99.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKSLKQAIQKGNTEVARIHAENAIRQKNQAINFLRMSARV |
.HLFNLKFAAKEL.R.AKKCDKEEKAEKAKI...K.AIQKGN.EVARIHAENAIRQKNQA.NFLRMSARV | |
Retrocopy | KHLFNLKFAAKELSRSAKKCDKEEKAEKAKI---KKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARV |
Parental | DAVAARVQTAVTMGKVRLKSQRCVVKSMDATLRSRTLKRISALMDKFEHQFETLDVQTQQMEDTMSSTTT |
DAVAARVQTAVTMGKV..KS...VVKSMDATL....L..ISALMDKFEHQFETLDVQTQQMEDTMSSTTT | |
Retrocopy | DAVAARVQTAVTMGKV-TKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTT |
Parental | LTTPQNAISQVDMLLQEMADEAGLDLNMELPQGQTGSVGISVASMEQDELSQRLAHLRDQ |
LTTPQN...QVDMLLQEMADEAGLDLNMELPQGQTGSVG.SVAS.EQDELSQRLA.LRDQ | |
Retrocopy | LTTPQN---QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLRDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000026660 | 1 retrocopy | |
Equus caballus | ENSECAG00000018625 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025604 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026457 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015250 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024811 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000004273 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031242 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000018556 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020505 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001416 | 2 retrocopies |
retro_pvam_208 , retro_pvam_59,
|
Rattus norvegicus | ENSRNOG00000002323 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016903 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011727 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008066 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000854 | 2 retrocopies |