RetrogeneDB ID: retro_mluc_1302

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429817:787567..788277(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TFB2M
• Ensembl ID: ENSMLUG00000003923
• Aliases: None
• Description: None

Sequence

>retro_mluc_1302
ATGTGGGTCCCAGTTGCAGAGCTTTCTCCATGGCTGAGGCTGGCAGCCTTTTTCAATGCTGGTCGCTTTTGCATTTGGAG
GTCAGGAGCGGCGAGATGGAAGGACATGCCAGCAAGGAACCACCGTGGTTTGTCTGACTTCTAGCAGAAGCTGGTACCCA
GTGAGGGTTTCAGAAAATTGCCCTCAGGGATGTCCAAGAGCAGCTTAGAGTCCGGGAGTTACATAGGCAGTCCCAGACTG
GCTGAGACCATGGTGCAGTTCCTGTTAAAAGAAGAAGACGATTACAACCTAATCTGCAAATTCAATCCAGGCCCTGGAAT
CCTGACTCAAGCATTACTTCAAAGAGGTGCCAGAGTGATTGCTGTTGAAAGTGATAAAACTTTTATTCCACATTTGGAGT
CCCTAGGGGGGAAAGCTGGGAAGAAAACTACACATTATCCACCGTGTCTTCTTTAAACTGGGTCCTAGTCGTTTTGGAGT
AGTAAAACCTGTTGTGAATCCAAAGTTGCTTTTCTGCAATTTGGGAATAGAAACACTTCCTTGGTCAGAAGGTATCCCTT
TAAAAGTCGTTGGAATCTTCCCAACTAAAAATGAGAAAACGATGATTTGGAAACTTTTACATGACATATATTCCTATACT
TCTGTATATAGATAATGGGCGAGTAGAACTAAATTCGTTTGTTAATGAGATGGAATCCAAACCTGTACTA

Alignment

ORF - retro_mluc_1302 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 59.95 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MWAPMAGLSPRLTLAAFPGAARLCLWRAGAARWKGVPARNRRGLSDFRPKLAPREGFKVLPPGVSKSRLE
          MW.P.A.LSP.L.LAAF..A.R.C.WR.GAARWK..PARN.RGLSDF..KL.P.EGF..LP.G.SKS.LE
Retrocopy MWVPVAELSPWLRLAAFFNAGRFCIWRSGAARWKDMPARNHRGLSDF*QKLVPSEGFRKLPSGMSKSSLE

Parental  SKRYILSPDLAETMVPFLLRN-DGCDLILEINPGPGILTSALLQRGARVIALESDKTFIPHLESLGKK-L
          S..YI.SP.LAETMV.FLL...D...LI...NPGPGILT.ALLQRGARVIA.ESDKTFIPHLESLG.K.L
Retrocopy SGSYIGSPRLAETMVQFLLKEEDDYNLICKFNPGPGILTQALLQRGARVIAVESDKTFIPHLESLGGK>L

Parental  GGKLHVLHCDFFKLDPRSFGVIKPVVNSKLLFQKFGIETLPWSKGIPLKVVGIFPTKNEKKMIWKVLHDI
          G.KLH..H..FFKL.P..FGV.KPVVN.KLLF...GIETLPWS.GIPLKVVGIFPTKNEK.MIWK.LHDI
Retrocopy GRKLHIIHRVFFKLGPSRFGVVKPVVNPKLLFCNLGIETLPWSEGIPLKVVGIFPTKNEKTMIWKLLHDI

Parental  YSCTSIYR-YGRVELNFFFNELESQRMM
          YS.TS.YR..GRVELN.F.NE.ES....
Retrocopy YSYTSVYR>NGRVELNSFVNEMESKPVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1302 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000013225	1 retrocopy	retro_cpor_451,
Homo sapiens	ENSG00000162851	1 retrocopy	retro_hsap_3548,
Gorilla gorilla	ENSGGOG00000001095	1 retrocopy	retro_ggor_2396,
Myotis lucifugus	ENSMLUG00000003923	1 retrocopy	retro_mluc_1302 ,
Macaca mulatta	ENSMMUG00000022915	1 retrocopy	retro_mmul_1814,
Nomascus leucogenys	ENSNLEG00000004146	1 retrocopy	retro_nleu_2323,
Oryctolagus cuniculus	ENSOCUG00000013727	2 retrocopies	retro_ocun_1557, retro_ocun_236,
Otolemur garnettii	ENSOGAG00000007823	2 retrocopies	retro_ogar_1444, retro_ogar_2187,
Pongo abelii	ENSPPYG00000000046	1 retrocopy	retro_pabe_3039,
Pan troglodytes	ENSPTRG00000002188	1 retrocopy	retro_ptro_2412,